Experiment: SMN_rich_anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0360 and Rru_A0361 are separated by 42 nucleotides Rru_A0361 and Rru_A0362 are separated by 180 nucleotides
Rru_A0360: Rru_A0360 - Initiation factor 2B alpha/beta/delta (NCBI), at 434,241 to 435,413
_A0360
Rru_A0361: Rru_A0361 - Methylthioadenosine phosphorylase (NCBI), at 435,456 to 436,340
_A0361
Rru_A0362: Rru_A0362 - Cytochrome c1 (NCBI), at 436,521 to 437,339
_A0362
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1 at 434.584 kb on + strand, within Rru_A0360 at 434.584 kb on + strand, within Rru_A0360 at 434.585 kb on - strand, within Rru_A0360 at 434.585 kb on - strand, within Rru_A0360 at 434.585 kb on - strand, within Rru_A0360 at 434.585 kb on - strand, within Rru_A0360 at 434.585 kb on - strand, within Rru_A0360 at 434.585 kb on - strand, within Rru_A0360 at 434.627 kb on - strand, within Rru_A0360 at 434.627 kb on - strand, within Rru_A0360 at 434.690 kb on + strand, within Rru_A0360 at 434.691 kb on - strand, within Rru_A0360 at 434.857 kb on + strand, within Rru_A0360 at 434.857 kb on + strand, within Rru_A0360 at 434.925 kb on - strand, within Rru_A0360 at 435.210 kb on + strand, within Rru_A0360 at 435.210 kb on + strand, within Rru_A0360 at 435.392 kb on + strand at 435.393 kb on - strand at 435.430 kb on + strand at 435.574 kb on + strand, within Rru_A0361 at 435.727 kb on + strand, within Rru_A0361 at 435.856 kb on + strand, within Rru_A0361 at 435.856 kb on + strand, within Rru_A0361 at 435.857 kb on - strand, within Rru_A0361 at 435.857 kb on - strand, within Rru_A0361 at 435.857 kb on - strand, within Rru_A0361 at 436.280 kb on + strand at 436.285 kb on + strand at 436.286 kb on - strand at 436.286 kb on - strand at 436.286 kb on - strand at 436.389 kb on + strand at 436.389 kb on + strand at 436.390 kb on - strand at 436.522 kb on + strand at 436.886 kb on - strand, within Rru_A0362
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_anaerobic remove 434,584 + Rru_A0360 0.29 +0.4 434,584 + Rru_A0360 0.29 -0.6 434,585 - Rru_A0360 0.29 +0.4 434,585 - Rru_A0360 0.29 +0.8 434,585 - Rru_A0360 0.29 +0.4 434,585 - Rru_A0360 0.29 -0.2 434,585 - Rru_A0360 0.29 +0.4 434,585 - Rru_A0360 0.29 +1.1 434,627 - Rru_A0360 0.33 +0.2 434,627 - Rru_A0360 0.33 -1.6 434,690 + Rru_A0360 0.38 +0.4 434,691 - Rru_A0360 0.38 -1.3 434,857 + Rru_A0360 0.53 +0.4 434,857 + Rru_A0360 0.53 +0.4 434,925 - Rru_A0360 0.58 +0.1 435,210 + Rru_A0360 0.83 +0.4 435,210 + Rru_A0360 0.83 +0.2 435,392 + +0.3 435,393 - -0.5 435,430 + +0.7 435,574 + Rru_A0361 0.13 +1.1 435,727 + Rru_A0361 0.31 -0.7 435,856 + Rru_A0361 0.45 +0.4 435,856 + Rru_A0361 0.45 -2.3 435,857 - Rru_A0361 0.45 +0.4 435,857 - Rru_A0361 0.45 +0.4 435,857 - Rru_A0361 0.45 +0.4 436,280 + -0.1 436,285 + +1.1 436,286 - -0.8 436,286 - +0.1 436,286 - -1.6 436,389 + +0.4 436,389 + +0.3 436,390 - +1.4 436,522 + -0.9 436,886 - Rru_A0362 0.45 +1.0
Or see this region's nucleotide sequence