Experiment: SMN_rich_anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0267 and Rru_A0268 are separated by 39 nucleotides Rru_A0268 and Rru_A0269 are separated by 305 nucleotides
Rru_A0267: Rru_A0267 - Lytic transglycosylase, catalytic (NCBI), at 331,970 to 333,694
_A0267
Rru_A0268: Rru_A0268 - Molybdopterin binding domain (NCBI), at 333,734 to 334,282
_A0268
Rru_A0269: Rru_A0269 - hypothetical protein (NCBI), at 334,588 to 335,469
_A0269
Position (kb) 333
334
335 Strain fitness (log2 ratio) -1
0
1 at 332.867 kb on + strand, within Rru_A0267 at 332.868 kb on - strand, within Rru_A0267 at 332.868 kb on - strand, within Rru_A0267 at 333.041 kb on + strand, within Rru_A0267 at 333.218 kb on + strand, within Rru_A0267 at 333.218 kb on + strand, within Rru_A0267 at 333.219 kb on - strand, within Rru_A0267 at 333.219 kb on - strand, within Rru_A0267 at 333.219 kb on - strand, within Rru_A0267 at 333.219 kb on - strand, within Rru_A0267 at 333.401 kb on + strand, within Rru_A0267 at 333.401 kb on + strand, within Rru_A0267 at 333.401 kb on + strand, within Rru_A0267 at 333.401 kb on + strand, within Rru_A0267 at 333.402 kb on - strand, within Rru_A0267 at 333.402 kb on - strand, within Rru_A0267 at 333.464 kb on + strand, within Rru_A0267 at 333.464 kb on + strand, within Rru_A0267 at 333.464 kb on + strand, within Rru_A0267 at 333.464 kb on + strand, within Rru_A0267 at 333.465 kb on - strand, within Rru_A0267 at 333.465 kb on - strand, within Rru_A0267 at 333.465 kb on - strand, within Rru_A0267 at 333.466 kb on + strand, within Rru_A0267 at 333.466 kb on + strand, within Rru_A0267 at 333.466 kb on + strand, within Rru_A0267 at 333.512 kb on + strand, within Rru_A0267 at 333.593 kb on + strand at 333.593 kb on + strand at 333.593 kb on + strand at 333.594 kb on - strand at 333.719 kb on + strand at 333.719 kb on + strand at 333.719 kb on + strand at 333.720 kb on - strand at 333.720 kb on - strand at 334.022 kb on + strand, within Rru_A0268 at 334.023 kb on - strand, within Rru_A0268 at 334.023 kb on - strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.133 kb on + strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.134 kb on - strand, within Rru_A0268 at 334.261 kb on + strand at 334.261 kb on + strand at 334.262 kb on - strand at 334.262 kb on - strand at 334.280 kb on + strand at 334.281 kb on - strand at 334.281 kb on - strand at 334.281 kb on - strand at 334.319 kb on + strand at 334.320 kb on - strand at 334.320 kb on - strand at 334.555 kb on - strand at 334.641 kb on + strand at 334.651 kb on + strand at 334.651 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_anaerobic remove 332,867 + Rru_A0267 0.52 -0.1 332,868 - Rru_A0267 0.52 -0.1 332,868 - Rru_A0267 0.52 +0.7 333,041 + Rru_A0267 0.62 -0.4 333,218 + Rru_A0267 0.72 -0.0 333,218 + Rru_A0267 0.72 -0.4 333,219 - Rru_A0267 0.72 +0.0 333,219 - Rru_A0267 0.72 -0.2 333,219 - Rru_A0267 0.72 -0.6 333,219 - Rru_A0267 0.72 -0.1 333,401 + Rru_A0267 0.83 -0.0 333,401 + Rru_A0267 0.83 -0.0 333,401 + Rru_A0267 0.83 +0.0 333,401 + Rru_A0267 0.83 +0.4 333,402 - Rru_A0267 0.83 -0.0 333,402 - Rru_A0267 0.83 -0.1 333,464 + Rru_A0267 0.87 -0.3 333,464 + Rru_A0267 0.87 -0.6 333,464 + Rru_A0267 0.87 -0.4 333,464 + Rru_A0267 0.87 -0.5 333,465 - Rru_A0267 0.87 +0.0 333,465 - Rru_A0267 0.87 -0.2 333,465 - Rru_A0267 0.87 -0.2 333,466 + Rru_A0267 0.87 +0.1 333,466 + Rru_A0267 0.87 -0.2 333,466 + Rru_A0267 0.87 +0.4 333,512 + Rru_A0267 0.89 +0.0 333,593 + +0.4 333,593 + +0.2 333,593 + -0.5 333,594 - -0.2 333,719 + -0.2 333,719 + -0.1 333,719 + -0.1 333,720 - -0.2 333,720 - +0.3 334,022 + Rru_A0268 0.52 +0.4 334,023 - Rru_A0268 0.53 -0.3 334,023 - Rru_A0268 0.53 +0.2 334,133 + Rru_A0268 0.73 -0.4 334,133 + Rru_A0268 0.73 +0.0 334,133 + Rru_A0268 0.73 +0.4 334,133 + Rru_A0268 0.73 -0.2 334,133 + Rru_A0268 0.73 -0.1 334,133 + Rru_A0268 0.73 -0.3 334,133 + Rru_A0268 0.73 +0.4 334,133 + Rru_A0268 0.73 +0.2 334,133 + Rru_A0268 0.73 +0.2 334,133 + Rru_A0268 0.73 +0.1 334,134 - Rru_A0268 0.73 -0.4 334,134 - Rru_A0268 0.73 -0.2 334,134 - Rru_A0268 0.73 +0.3 334,134 - Rru_A0268 0.73 -0.1 334,134 - Rru_A0268 0.73 -0.0 334,134 - Rru_A0268 0.73 +0.2 334,261 + -0.3 334,261 + -0.7 334,262 - +0.0 334,262 - +0.4 334,280 + +0.2 334,281 - +0.4 334,281 - -0.8 334,281 - +0.2 334,319 + +1.2 334,320 - -0.5 334,320 - -0.6 334,555 - +0.2 334,641 + -0.8 334,651 + +0.5 334,651 + +0.8
Or see this region's nucleotide sequence