Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08450

Experiment: R2A with Gallium(III)chloride 0.78125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS08440 and LRK54_RS08445 are separated by 88 nucleotidesLRK54_RS08445 and LRK54_RS08450 are separated by 4 nucleotidesLRK54_RS08450 and LRK54_RS08455 are separated by 11 nucleotidesLRK54_RS08455 and LRK54_RS08460 are separated by 55 nucleotides LRK54_RS08440: LRK54_RS08440 - pyridoxine 5'-phosphate synthase, at 1,841,453 to 1,842,196 _RS08440 LRK54_RS08445: LRK54_RS08445 - biopolymer transporter ExbD, at 1,842,285 to 1,842,689 _RS08445 LRK54_RS08450: LRK54_RS08450 - biopolymer transporter ExbD, at 1,842,694 to 1,843,116 _RS08450 LRK54_RS08455: LRK54_RS08455 - MotA/TolQ/ExbB proton channel family protein, at 1,843,128 to 1,843,901 _RS08455 LRK54_RS08460: LRK54_RS08460 - energy transducer TonB, at 1,843,957 to 1,844,616 _RS08460 Position (kb) 1842 1843 1844Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1843.103 kb on - strandat 1843.103 kb on - strandat 1843.913 kb on - strandat 1843.913 kb on - strandat 1843.913 kb on - strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.934 kb on + strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.935 kb on - strandat 1843.940 kb on + strandat 1843.940 kb on + strandat 1843.941 kb on - strandat 1843.941 kb on - strandat 1843.941 kb on - strandat 1843.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Gallium(III)chloride 0.78125 mM
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1,843,103 - -1.0
1,843,103 - -4.4
1,843,913 - -0.1
1,843,913 - -1.3
1,843,913 - +0.9
1,843,934 + +0.9
1,843,934 + -1.4
1,843,934 + +0.9
1,843,934 + -1.1
1,843,934 + -0.7
1,843,934 + -1.7
1,843,934 + -0.9
1,843,934 + -1.3
1,843,934 + +0.3
1,843,935 - -2.0
1,843,935 - -1.3
1,843,935 - -2.6
1,843,935 - -0.3
1,843,935 - +0.5
1,843,935 - -2.0
1,843,935 - -2.4
1,843,935 - -3.3
1,843,935 - -1.7
1,843,935 - -3.3
1,843,935 - -3.1
1,843,935 - -2.4
1,843,935 - -2.7
1,843,935 - -2.3
1,843,935 - -2.6
1,843,935 - -3.0
1,843,935 - -2.6
1,843,935 - -2.3
1,843,940 + +0.3
1,843,940 + -1.4
1,843,941 - -0.1
1,843,941 - -2.4
1,843,941 - -1.9
1,843,959 - -1.3

Or see this region's nucleotide sequence