Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2969

Experiment: Choline chloride 40 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 40 mM
3,083,523	+		Ga0059261_2967	0.86	+0.4
3,083,523	+		Ga0059261_2967	0.86	+0.8
3,083,523	+		Ga0059261_2967	0.86	+0.2
3,083,523	+		Ga0059261_2967	0.86	-0.3
3,083,523	+		Ga0059261_2967	0.86	-0.6
3,083,523	+		Ga0059261_2967	0.86	-0.7
3,083,523	+		Ga0059261_2967	0.86	+0.3
3,083,524	-		Ga0059261_2967	0.86	-0.4
3,083,524	-		Ga0059261_2967	0.86	-0.7
3,083,524	-		Ga0059261_2967	0.86	-0.5
3,083,524	-		Ga0059261_2967	0.86	+0.0
3,083,524	-		Ga0059261_2967	0.86	-0.9
3,083,568	+				+0.1
3,083,568	+				-0.7
3,083,568	+				+0.0
3,083,569	-				+0.6
3,083,625	+				-0.1
3,083,625	+				-0.0
3,083,625	+				-0.5
3,083,625	+				-0.5
3,083,626	-				-0.2
3,083,626	-				+0.7
3,083,626	-				-0.3
3,083,628	+				-0.6
3,083,628	+				-0.5
3,083,628	+				+0.3
3,083,629	-				+0.0
3,083,629	-				+1.0
3,083,629	-				-0.5
3,083,718	+				-0.4
3,083,719	-				+0.3
3,083,719	-				-0.9
3,083,719	-				-0.3
3,083,751	+		Ga0059261_2968	0.11	+0.3
3,083,751	+		Ga0059261_2968	0.11	-0.5
3,083,757	+		Ga0059261_2968	0.12	-0.1
3,083,757	+		Ga0059261_2968	0.12	-0.3
3,083,757	+		Ga0059261_2968	0.12	+0.8
3,083,758	-		Ga0059261_2968	0.12	+0.5
3,083,758	-		Ga0059261_2968	0.12	-1.0
3,083,758	-		Ga0059261_2968	0.12	-0.9
3,083,758	-		Ga0059261_2968	0.12	-0.1
3,083,991	+		Ga0059261_2968	0.47	-0.1
3,083,992	-		Ga0059261_2968	0.48	+1.1
3,083,992	-		Ga0059261_2968	0.48	-0.9
3,083,992	-		Ga0059261_2968	0.48	+1.2
3,084,189	+		Ga0059261_2968	0.78	-0.7
3,084,189	+		Ga0059261_2968	0.78	-0.2
3,084,189	+		Ga0059261_2968	0.78	-0.6
3,084,189	+		Ga0059261_2968	0.78	+0.5
3,084,189	+		Ga0059261_2968	0.78	-0.6
3,084,189	+		Ga0059261_2968	0.78	+0.6
3,084,189	+		Ga0059261_2968	0.78	+0.1
3,084,189	+		Ga0059261_2968	0.78	-0.1
3,084,189	+		Ga0059261_2968	0.78	+0.3
3,084,189	+		Ga0059261_2968	0.78	-0.2
3,084,189	+		Ga0059261_2968	0.78	+0.8
3,084,189	+		Ga0059261_2968	0.78	-0.0
3,084,189	+		Ga0059261_2968	0.78	+0.1
3,084,189	+		Ga0059261_2968	0.78	-0.1
3,084,189	+		Ga0059261_2968	0.78	-0.2
3,084,189	+		Ga0059261_2968	0.78	+1.6
3,084,189	+		Ga0059261_2968	0.78	-0.5
3,084,189	+		Ga0059261_2968	0.78	-0.4
3,084,190	-		Ga0059261_2968	0.78	-0.5
3,084,190	-		Ga0059261_2968	0.78	-0.2
3,084,190	-		Ga0059261_2968	0.78	+0.1
3,084,190	-		Ga0059261_2968	0.78	+1.3
3,084,190	-		Ga0059261_2968	0.78	-0.1
3,084,190	-		Ga0059261_2968	0.78	+1.6
3,084,190	-		Ga0059261_2968	0.78	-0.1
3,084,190	-		Ga0059261_2968	0.78	-0.7
3,084,219	+		Ga0059261_2968	0.82	+0.0
3,084,219	+		Ga0059261_2968	0.82	+0.2
3,084,219	+		Ga0059261_2968	0.82	+0.4
3,084,219	+		Ga0059261_2968	0.82	-0.2
3,084,219	+		Ga0059261_2968	0.82	+0.8
3,084,219	+		Ga0059261_2968	0.82	-0.7
3,084,220	-		Ga0059261_2968	0.82	+0.9
3,084,220	-		Ga0059261_2968	0.82	+0.2
3,084,220	-		Ga0059261_2968	0.82	-1.2
3,084,220	-		Ga0059261_2968	0.82	-0.1
3,084,220	-		Ga0059261_2968	0.82	+0.4
3,084,220	-		Ga0059261_2968	0.82	-0.8
3,084,228	+		Ga0059261_2968	0.84	-0.4
3,084,228	+		Ga0059261_2968	0.84	+0.7
3,084,228	+		Ga0059261_2968	0.84	-1.3
3,084,228	+		Ga0059261_2968	0.84	-1.3
3,084,228	+		Ga0059261_2968	0.84	-0.1
3,084,228	+		Ga0059261_2968	0.84	+1.1
3,084,228	+		Ga0059261_2968	0.84	+0.0
3,084,228	+		Ga0059261_2968	0.84	-0.7
3,084,228	+		Ga0059261_2968	0.84	-0.1
3,084,228	+		Ga0059261_2968	0.84	+0.3
3,084,229	-		Ga0059261_2968	0.84	-0.1
3,084,229	-		Ga0059261_2968	0.84	-0.1
3,084,229	-		Ga0059261_2968	0.84	-0.2
3,084,229	-				-0.4
3,084,229	-		Ga0059261_2968	0.84	+0.7
3,084,229	-		Ga0059261_2968	0.84	-0.3
3,084,229	-		Ga0059261_2968	0.84	-0.2
3,084,229	-		Ga0059261_2968	0.84	+0.0
3,084,229	-		Ga0059261_2968	0.84	+0.3
3,084,229	-		Ga0059261_2968	0.84	+0.2
3,084,229	-		Ga0059261_2968	0.84	+0.7
3,084,229	-		Ga0059261_2968	0.84	+0.4
3,084,229	-		Ga0059261_2968	0.84	+0.0
3,084,229	-		Ga0059261_2968	0.84	+0.7
3,084,229	-		Ga0059261_2968	0.84	-0.9
3,084,346	+				-0.6
3,084,347	-				+0.4
3,084,347	-				+0.0
3,084,383	+				-0.9
3,084,391	+				+0.7
3,084,411	+				+0.3
3,084,411	+				-0.3
3,084,411	+				-0.1
3,084,411	+				+0.4
3,084,411	+				-1.2
3,084,412	-				-0.4
3,084,412	-				+0.2
3,084,444	+				+0.2
3,084,444	+				+0.6
3,084,591	+		Ga0059261_2969	0.15	-0.2
3,084,591	+		Ga0059261_2969	0.15	-0.4
3,084,591	+		Ga0059261_2969	0.15	-0.5
3,084,591	+		Ga0059261_2969	0.15	+0.1
3,084,592	-		Ga0059261_2969	0.15	+0.9
3,084,592	-		Ga0059261_2969	0.15	-0.0
3,084,592	-		Ga0059261_2969	0.15	-0.0
3,084,592	-		Ga0059261_2969	0.15	+0.3
3,084,592	-		Ga0059261_2969	0.15	-0.9
3,084,592	-		Ga0059261_2969	0.15	-0.2
3,084,592	-		Ga0059261_2969	0.15	+0.0
3,084,687	+		Ga0059261_2969	0.22	-0.7
3,084,687	+		Ga0059261_2969	0.22	-0.2
3,084,687	+		Ga0059261_2969	0.22	+0.1
3,084,688	-		Ga0059261_2969	0.22	+0.2
3,084,688	-		Ga0059261_2969	0.22	+0.4
3,084,688	-		Ga0059261_2969	0.22	-0.1
3,084,720	+		Ga0059261_2969	0.24	-0.4
3,084,720	+		Ga0059261_2969	0.24	-0.2
3,084,720	+		Ga0059261_2969	0.24	-0.4
3,084,720	+		Ga0059261_2969	0.24	+0.6
3,084,720	+		Ga0059261_2969	0.24	+0.1
3,084,720	+		Ga0059261_2969	0.24	-0.2
3,084,720	+		Ga0059261_2969	0.24	+0.3
3,084,720	+		Ga0059261_2969	0.24	-0.7
3,084,720	+				+2.0
3,084,720	+		Ga0059261_2969	0.24	+0.6
3,084,720	+		Ga0059261_2969	0.24	-0.4
3,084,721	-		Ga0059261_2969	0.24	+0.4
3,084,721	-		Ga0059261_2969	0.24	-0.1
3,084,721	-		Ga0059261_2969	0.24	+1.5
3,084,721	-		Ga0059261_2969	0.24	+1.5
3,084,721	-		Ga0059261_2969	0.24	+0.4
3,084,721	-		Ga0059261_2969	0.24	+0.1
3,084,721	-		Ga0059261_2969	0.24	-0.3
3,084,721	-		Ga0059261_2969	0.24	+0.6
3,084,721	-		Ga0059261_2969	0.24	+0.4
3,084,807	+		Ga0059261_2969	0.30	+0.2
3,084,807	+		Ga0059261_2969	0.30	+0.5
3,084,807	+		Ga0059261_2969	0.30	-0.6
3,084,807	+		Ga0059261_2969	0.30	-0.2
3,084,807	+		Ga0059261_2969	0.30	+0.0
3,084,807	+		Ga0059261_2969	0.30	-0.3
3,084,807	+		Ga0059261_2969	0.30	+0.6
3,084,807	+		Ga0059261_2969	0.30	-0.0
3,084,807	+		Ga0059261_2969	0.30	-0.2
3,084,807	+				+1.0
3,084,807	+		Ga0059261_2969	0.30	-0.5
3,084,807	+				-0.4
3,084,807	+		Ga0059261_2969	0.30	-0.5
3,084,808	-		Ga0059261_2969	0.30	+1.5
3,084,808	-		Ga0059261_2969	0.30	+1.2
3,084,808	-		Ga0059261_2969	0.30	-1.1
3,084,808	-		Ga0059261_2969	0.30	+0.7
3,084,808	-		Ga0059261_2969	0.30	-0.0
3,084,808	-		Ga0059261_2969	0.30	-0.3
3,084,808	-		Ga0059261_2969	0.30	-1.3
3,084,808	-		Ga0059261_2969	0.30	-0.1
3,084,808	-		Ga0059261_2969	0.30	+0.1
3,084,808	-		Ga0059261_2969	0.30	-0.1
3,084,808	-		Ga0059261_2969	0.30	+1.1
3,084,808	-		Ga0059261_2969	0.30	-0.2
3,084,808	-				-0.4
3,084,808	-		Ga0059261_2969	0.30	+0.0
3,084,808	-		Ga0059261_2969	0.30	-1.0
3,084,808	-		Ga0059261_2969	0.30	+0.7
3,084,808	-		Ga0059261_2969	0.30	+0.8
3,084,808	-		Ga0059261_2969	0.30	+0.2
3,085,128	+		Ga0059261_2969	0.53	-0.5
3,085,128	+				-0.4
3,085,129	-		Ga0059261_2969	0.53	+0.6
3,085,129	-		Ga0059261_2969	0.53	-0.5
3,085,129	-		Ga0059261_2969	0.53	+0.7
3,085,129	-		Ga0059261_2969	0.53	+0.4
3,085,129	-		Ga0059261_2969	0.53	-0.7
3,085,230	+		Ga0059261_2969	0.60	+1.3
3,085,230	+		Ga0059261_2969	0.60	+0.4
3,085,231	-		Ga0059261_2969	0.60	+0.0
3,085,360	-		Ga0059261_2969	0.69	+1.1
3,085,395	+		Ga0059261_2969	0.71	+0.5
3,085,396	-		Ga0059261_2969	0.71	+0.8
3,085,396	-		Ga0059261_2969	0.71	+0.1
3,085,398	+		Ga0059261_2969	0.71	+1.0
3,085,398	+		Ga0059261_2969	0.71	-0.2
3,085,399	-		Ga0059261_2969	0.71	-0.8
3,085,399	-		Ga0059261_2969	0.71	-0.3
3,085,399	-		Ga0059261_2969	0.71	+0.9
3,085,399	-		Ga0059261_2969	0.71	-0.4
3,085,500	+		Ga0059261_2969	0.78	-0.7
3,085,500	+		Ga0059261_2969	0.78	-0.5
3,085,500	+		Ga0059261_2969	0.78	+0.2
3,085,501	-		Ga0059261_2969	0.78	-0.7
3,085,501	-		Ga0059261_2969	0.78	+0.1
3,085,501	-		Ga0059261_2969	0.78	+2.0
3,085,501	-		Ga0059261_2969	0.78	-0.3
3,085,501	-		Ga0059261_2969	0.78	-0.1
3,085,501	-		Ga0059261_2969	0.78	+0.2
3,085,501	-		Ga0059261_2969	0.78	-0.7
3,085,501	-		Ga0059261_2969	0.78	-0.9
3,085,599	+		Ga0059261_2969	0.85	-0.2
3,085,599	+		Ga0059261_2969	0.85	-0.6
3,085,599	+		Ga0059261_2969	0.85	+0.6
3,085,599	+		Ga0059261_2969	0.85	-0.4
3,085,600	-		Ga0059261_2969	0.85	+0.1
3,085,600	-		Ga0059261_2969	0.85	-0.1
3,085,600	-		Ga0059261_2969	0.85	+0.3
3,085,617	+		Ga0059261_2969	0.87	+0.0
3,085,617	+		Ga0059261_2969	0.87	+1.3
3,085,617	+		Ga0059261_2969	0.87	+0.3
3,085,617	+		Ga0059261_2969	0.87	+0.3
3,085,617	+		Ga0059261_2969	0.87	+0.2
3,085,617	+		Ga0059261_2969	0.87	+1.6
3,085,617	+		Ga0059261_2969	0.87	-0.0
3,085,618	-		Ga0059261_2969	0.87	-0.2
3,085,618	-		Ga0059261_2969	0.87	-0.0
3,085,618	-		Ga0059261_2969	0.87	+1.9
3,085,618	-		Ga0059261_2969	0.87	+0.1
3,085,618	-		Ga0059261_2969	0.87	-0.1
3,085,618	-		Ga0059261_2969	0.87	+2.0
3,085,618	-		Ga0059261_2969	0.87	+0.9
3,085,618	-		Ga0059261_2969	0.87	+1.2
3,085,618	-		Ga0059261_2969	0.87	+0.2
3,085,618	-		Ga0059261_2969	0.87	+1.1
3,085,618	-		Ga0059261_2969	0.87	+0.1
3,085,618	-		Ga0059261_2969	0.87	+0.0
3,085,734	+				-0.5
3,085,734	+				-0.1
3,085,734	+				+0.0
3,085,734	+				+0.4
3,085,734	+				-0.4
3,085,735	-				-0.6
3,085,735	-				-0.2
3,085,735	-				-0.9
3,085,735	-				+0.1
3,085,735	-				+0.2
3,085,735	-				-0.9
3,085,735	-				+0.5
3,085,735	-				-0.2
3,085,735	-				+0.7
3,085,735	-				+0.1
3,085,825	+				+1.1
3,085,825	+				-0.1
3,085,825	+				+0.4
3,085,825	+				-0.1
3,085,825	+				+0.1
3,085,825	+				-1.3
3,085,825	+				+0.5
3,085,825	+				+0.3
3,085,825	+				+0.7
3,085,825	+				+0.1
3,085,825	+				-0.0
3,085,826	-				-1.1
3,085,826	-				+0.4
3,085,826	-				+0.4
3,085,826	-				+0.2
3,085,826	-				+0.5
3,086,048	-				+0.0
3,086,048	-				+0.2
3,086,048	-				+1.0
3,086,049	+				+0.7
3,086,049	+				-0.1
3,086,049	+				+0.9
3,086,050	-				-0.4
3,086,060	+				-0.2
3,086,060	+				+0.8
3,086,060	+				+0.1
3,086,060	+				+0.3
3,086,060	+				-0.7
3,086,061	-				+0.6
3,086,061	-				-0.4
3,086,061	-				-0.4
3,086,061	-				-0.1
3,086,077	+				-0.5
3,086,077	+				+1.1
3,086,078	-				-0.7
3,086,137	+				+0.1
3,086,138	-				+0.1
3,086,138	-				-0.9
3,086,210	+				-1.2
3,086,210	+				-0.9
3,086,210	+				-0.1
3,086,210	+				-0.3
3,086,210	+				-1.2
3,086,210	+				-1.1
3,086,210	+				-0.6
3,086,211	-				-0.1
3,086,211	-				-0.3
3,086,211	-				+0.6
3,086,213	+				-1.3
3,086,213	+				-0.5
3,086,213	+				+0.4
3,086,213	+				+0.1
3,086,213	+				-0.3
3,086,213	+				-0.4
3,086,213	+				+1.3
3,086,214	-				-0.6
3,086,214	-				-1.0
3,086,214	-				-0.3
3,086,214	-				-1.2
3,086,214	-				-0.6
3,086,214	-				-0.4
3,086,214	-				-2.2
3,086,214	-				-0.3
3,086,215	+				+0.0
3,086,215	+				-0.6
3,086,215	+				+0.7
3,086,215	+				-0.3
3,086,216	-				-0.3
3,086,216	-				-2.5
3,086,216	-				-1.1
3,086,216	-				-0.1
3,086,216	-				+1.6
3,086,216	-				+0.2
3,086,216	-				-1.2
3,086,216	-				+0.1
3,086,228	+				-0.4
3,086,228	+				+0.3
3,086,228	+				-0.1
3,086,351	+		Ga0059261_2970	0.19	-0.8
3,086,352	-		Ga0059261_2970	0.19	-0.2
3,086,380	+		Ga0059261_2970	0.22	-0.5
3,086,380	+		Ga0059261_2970	0.22	-1.3
3,086,381	-		Ga0059261_2970	0.22	-0.4
3,086,390	+		Ga0059261_2970	0.23	-0.1
3,086,391	-		Ga0059261_2970	0.23	-0.5
3,086,657	+		Ga0059261_2970	0.52	-0.3
3,086,657	+		Ga0059261_2970	0.52	-0.8
3,086,657	+		Ga0059261_2970	0.52	-0.4
3,086,657	+		Ga0059261_2970	0.52	-0.7
3,086,657	+		Ga0059261_2970	0.52	-0.1
3,086,657	+		Ga0059261_2970	0.52	-0.3
3,086,657	+		Ga0059261_2970	0.52	-0.2
3,086,657	+		Ga0059261_2970	0.52	-0.6
3,086,657	+		Ga0059261_2970	0.52	-0.4
3,086,657	+		Ga0059261_2970	0.52	+0.6
3,086,657	+		Ga0059261_2970	0.52	-0.1
3,086,657	+		Ga0059261_2970	0.52	-0.6
3,086,657	+		Ga0059261_2970	0.52	+0.3
3,086,657	+		Ga0059261_2970	0.52	-0.1
3,086,657	+		Ga0059261_2970	0.52	-0.2
3,086,658	-		Ga0059261_2970	0.52	-0.5
3,086,658	-		Ga0059261_2970	0.52	+0.2
3,086,658	-		Ga0059261_2970	0.52	-0.4
3,086,658	-		Ga0059261_2970	0.52	-1.2
3,086,658	-		Ga0059261_2970	0.52	-2.7
3,086,658	-		Ga0059261_2970	0.52	-0.5
3,086,658	-		Ga0059261_2970	0.52	+0.1
3,086,658	-		Ga0059261_2970	0.52	+0.4
3,086,658	-				-0.7
3,086,658	-		Ga0059261_2970	0.52	-0.8
3,086,658	-		Ga0059261_2970	0.52	-0.6
3,086,658	-		Ga0059261_2970	0.52	-0.7
3,086,658	-		Ga0059261_2970	0.52	+0.0
3,086,658	-		Ga0059261_2970	0.52	-0.4