Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0434

Experiment: Choline chloride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0432 and Ga0059261_0433 are separated by 17 nucleotidesGa0059261_0433 and Ga0059261_0434 are separated by 342 nucleotidesGa0059261_0434 and Ga0059261_0435 are separated by 286 nucleotides Ga0059261_0432: Ga0059261_0432 - Glutaredoxin and related proteins, at 417,115 to 417,876 _0432 Ga0059261_0433: Ga0059261_0433 - Uncharacterized protein conserved in bacteria, at 417,894 to 418,169 _0433 Ga0059261_0434: Ga0059261_0434 - Major Facilitator Superfamily, at 418,512 to 419,930 _0434 Ga0059261_0435: Ga0059261_0435 - RND family efflux transporter, MFP subunit, at 420,217 to 421,383 _0435 Position (kb) 418 419 420Strain fitness (log2 ratio) -1 0 1 2at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.600 kb on - strand, within Ga0059261_0432at 417.600 kb on - strand, within Ga0059261_0432at 417.600 kb on - strand, within Ga0059261_0432at 417.600 kb on - strand, within Ga0059261_0432at 417.600 kb on - strand, within Ga0059261_0432at 417.603 kb on + strand, within Ga0059261_0432at 417.603 kb on + strand, within Ga0059261_0432at 417.604 kb on - strandat 417.810 kb on - strandat 417.895 kb on + strandat 417.895 kb on + strandat 417.895 kb on + strandat 417.895 kb on + strandat 418.064 kb on + strand, within Ga0059261_0433at 418.065 kb on - strand, within Ga0059261_0433at 418.075 kb on + strand, within Ga0059261_0433at 418.075 kb on + strand, within Ga0059261_0433at 418.076 kb on - strand, within Ga0059261_0433at 418.076 kb on - strand, within Ga0059261_0433at 418.169 kb on + strandat 418.169 kb on + strandat 418.169 kb on + strandat 418.169 kb on + strandat 418.169 kb on + strandat 418.169 kb on + strandat 418.170 kb on - strandat 418.170 kb on - strandat 418.170 kb on - strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.175 kb on + strandat 418.175 kb on + strandat 418.175 kb on + strandat 418.249 kb on + strandat 418.249 kb on + strandat 418.249 kb on + strandat 418.249 kb on + strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.252 kb on + strandat 418.252 kb on + strandat 418.253 kb on - strandat 418.253 kb on - strandat 418.253 kb on - strandat 418.253 kb on - strandat 418.253 kb on - strandat 418.378 kb on + strandat 418.378 kb on + strandat 418.491 kb on + strandat 418.491 kb on + strandat 418.492 kb on - strandat 418.492 kb on - strandat 418.492 kb on - strandat 418.492 kb on - strandat 418.513 kb on + strandat 418.513 kb on + strandat 418.701 kb on + strand, within Ga0059261_0434at 418.720 kb on + strand, within Ga0059261_0434at 418.720 kb on + strand, within Ga0059261_0434at 418.720 kb on + strand, within Ga0059261_0434at 418.721 kb on - strandat 418.721 kb on - strand, within Ga0059261_0434at 418.727 kb on + strand, within Ga0059261_0434at 418.728 kb on - strand, within Ga0059261_0434at 418.728 kb on - strand, within Ga0059261_0434at 418.728 kb on - strand, within Ga0059261_0434at 418.799 kb on + strand, within Ga0059261_0434at 418.799 kb on + strand, within Ga0059261_0434at 418.800 kb on - strand, within Ga0059261_0434at 418.800 kb on - strand, within Ga0059261_0434at 418.801 kb on + strand, within Ga0059261_0434at 418.801 kb on + strand, within Ga0059261_0434at 418.801 kb on + strand, within Ga0059261_0434at 418.802 kb on - strandat 418.802 kb on - strand, within Ga0059261_0434at 418.802 kb on - strand, within Ga0059261_0434at 419.003 kb on + strand, within Ga0059261_0434at 419.003 kb on + strand, within Ga0059261_0434at 419.003 kb on + strand, within Ga0059261_0434at 419.003 kb on + strand, within Ga0059261_0434at 419.004 kb on - strand, within Ga0059261_0434at 419.004 kb on - strand, within Ga0059261_0434at 419.004 kb on - strand, within Ga0059261_0434at 419.004 kb on - strand, within Ga0059261_0434at 419.059 kb on + strand, within Ga0059261_0434at 419.059 kb on + strand, within Ga0059261_0434at 419.059 kb on + strand, within Ga0059261_0434at 419.059 kb on + strand, within Ga0059261_0434at 419.060 kb on - strand, within Ga0059261_0434at 419.060 kb on - strand, within Ga0059261_0434at 419.060 kb on - strand, within Ga0059261_0434at 419.060 kb on - strandat 419.284 kb on + strand, within Ga0059261_0434at 419.284 kb on + strand, within Ga0059261_0434at 419.284 kb on + strand, within Ga0059261_0434at 419.285 kb on - strand, within Ga0059261_0434at 419.285 kb on - strand, within Ga0059261_0434at 419.285 kb on - strand, within Ga0059261_0434at 419.285 kb on - strand, within Ga0059261_0434at 419.448 kb on - strand, within Ga0059261_0434at 419.669 kb on + strand, within Ga0059261_0434at 419.669 kb on + strand, within Ga0059261_0434at 419.669 kb on + strand, within Ga0059261_0434at 419.669 kb on + strand, within Ga0059261_0434at 419.669 kb on + strand, within Ga0059261_0434at 419.669 kb on + strand, within Ga0059261_0434at 419.669 kb on + strand, within Ga0059261_0434at 419.669 kb on + strand, within Ga0059261_0434at 419.669 kb on + strand, within Ga0059261_0434at 419.669 kb on + strand, within Ga0059261_0434at 419.669 kb on + strand, within Ga0059261_0434at 419.670 kb on - strand, within Ga0059261_0434at 419.670 kb on - strand, within Ga0059261_0434at 419.670 kb on - strand, within Ga0059261_0434at 419.670 kb on - strand, within Ga0059261_0434at 419.670 kb on - strand, within Ga0059261_0434at 419.670 kb on - strand, within Ga0059261_0434at 419.670 kb on - strand, within Ga0059261_0434at 419.670 kb on - strand, within Ga0059261_0434at 419.670 kb on - strand, within Ga0059261_0434at 419.670 kb on - strand, within Ga0059261_0434at 419.670 kb on - strand, within Ga0059261_0434at 419.673 kb on + strand, within Ga0059261_0434at 419.674 kb on - strand, within Ga0059261_0434at 419.674 kb on - strand, within Ga0059261_0434at 419.764 kb on + strand, within Ga0059261_0434at 419.764 kb on + strand, within Ga0059261_0434at 419.764 kb on + strand, within Ga0059261_0434at 419.764 kb on + strand, within Ga0059261_0434at 419.764 kb on + strand, within Ga0059261_0434at 419.764 kb on + strand, within Ga0059261_0434at 419.765 kb on - strand, within Ga0059261_0434at 419.765 kb on - strand, within Ga0059261_0434at 419.765 kb on - strand, within Ga0059261_0434at 419.765 kb on - strand, within Ga0059261_0434at 419.765 kb on - strand, within Ga0059261_0434at 419.843 kb on + strandat 419.843 kb on + strandat 419.843 kb on + strandat 419.844 kb on - strandat 419.844 kb on - strandat 419.844 kb on - strandat 419.844 kb on - strandat 419.844 kb on - strandat 419.844 kb on - strandat 419.844 kb on - strandat 419.844 kb on - strandat 419.844 kb on - strandat 419.844 kb on - strandat 419.844 kb on - strandat 419.844 kb on - strandat 419.849 kb on + strandat 419.849 kb on + strandat 419.849 kb on + strandat 419.849 kb on + strandat 419.849 kb on + strandat 419.849 kb on + strandat 419.850 kb on - strandat 419.850 kb on - strandat 419.883 kb on + strandat 419.883 kb on + strandat 419.884 kb on - strandat 419.987 kb on + strandat 419.987 kb on + strandat 419.987 kb on + strandat 419.988 kb on - strandat 420.066 kb on + strandat 420.066 kb on + strandat 420.276 kb on - strandat 420.366 kb on + strand, within Ga0059261_0435at 420.366 kb on + strand, within Ga0059261_0435at 420.366 kb on + strand, within Ga0059261_0435at 420.366 kb on + strand, within Ga0059261_0435at 420.366 kb on + strand, within Ga0059261_0435at 420.366 kb on + strandat 420.366 kb on + strand, within Ga0059261_0435at 420.367 kb on - strand, within Ga0059261_0435at 420.367 kb on - strand, within Ga0059261_0435at 420.367 kb on - strand, within Ga0059261_0435at 420.367 kb on - strand, within Ga0059261_0435at 420.368 kb on + strand, within Ga0059261_0435at 420.368 kb on + strand, within Ga0059261_0435at 420.368 kb on + strand, within Ga0059261_0435at 420.368 kb on + strand, within Ga0059261_0435at 420.369 kb on - strand, within Ga0059261_0435at 420.369 kb on - strand, within Ga0059261_0435at 420.369 kb on - strand, within Ga0059261_0435at 420.369 kb on - strand, within Ga0059261_0435at 420.369 kb on - strand, within Ga0059261_0435at 420.382 kb on + strand, within Ga0059261_0435at 420.382 kb on + strand, within Ga0059261_0435at 420.382 kb on + strand, within Ga0059261_0435at 420.382 kb on + strand, within Ga0059261_0435at 420.382 kb on + strand, within Ga0059261_0435at 420.382 kb on + strand, within Ga0059261_0435at 420.383 kb on - strand, within Ga0059261_0435at 420.383 kb on - strand, within Ga0059261_0435at 420.383 kb on - strand, within Ga0059261_0435at 420.383 kb on - strand, within Ga0059261_0435at 420.383 kb on - strand, within Ga0059261_0435at 420.383 kb on - strand, within Ga0059261_0435at 420.385 kb on - strand, within Ga0059261_0435at 420.439 kb on + strand, within Ga0059261_0435at 420.440 kb on - strand, within Ga0059261_0435at 420.440 kb on - strand, within Ga0059261_0435at 420.440 kb on - strand, within Ga0059261_0435at 420.452 kb on + strand, within Ga0059261_0435at 420.452 kb on + strand, within Ga0059261_0435at 420.452 kb on + strand, within Ga0059261_0435at 420.452 kb on + strand, within Ga0059261_0435at 420.453 kb on - strand, within Ga0059261_0435at 420.453 kb on - strand, within Ga0059261_0435at 420.453 kb on - strand, within Ga0059261_0435at 420.453 kb on - strand, within Ga0059261_0435at 420.453 kb on - strand, within Ga0059261_0435at 420.453 kb on - strand, within Ga0059261_0435at 420.453 kb on - strand, within Ga0059261_0435at 420.453 kb on - strand, within Ga0059261_0435at 420.733 kb on + strand, within Ga0059261_0435at 420.733 kb on + strand, within Ga0059261_0435at 420.734 kb on - strand, within Ga0059261_0435at 420.734 kb on - strand, within Ga0059261_0435at 420.754 kb on - strand, within Ga0059261_0435at 420.886 kb on + strand, within Ga0059261_0435at 420.886 kb on + strand, within Ga0059261_0435at 420.887 kb on - strand, within Ga0059261_0435at 420.887 kb on - strand, within Ga0059261_0435

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 40 mM
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417,599 + Ga0059261_0432 0.64 +0.2
417,599 + Ga0059261_0432 0.64 -0.0
417,599 + Ga0059261_0432 0.64 -1.2
417,599 + Ga0059261_0432 0.64 -0.8
417,599 + Ga0059261_0432 0.64 +0.2
417,599 + Ga0059261_0432 0.64 -0.0
417,599 + Ga0059261_0432 0.64 -1.1
417,599 + Ga0059261_0432 0.64 -0.2
417,599 + Ga0059261_0432 0.64 +0.7
417,599 + Ga0059261_0432 0.64 +0.1
417,600 - Ga0059261_0432 0.64 +0.1
417,600 - Ga0059261_0432 0.64 +0.4
417,600 - Ga0059261_0432 0.64 +0.1
417,600 - Ga0059261_0432 0.64 +0.5
417,600 - Ga0059261_0432 0.64 +0.1
417,603 + Ga0059261_0432 0.64 -0.3
417,603 + Ga0059261_0432 0.64 +0.3
417,604 - +0.9
417,810 - +0.7
417,895 + +0.9
417,895 + -0.7
417,895 + -1.4
417,895 + -0.1
418,064 + Ga0059261_0433 0.62 +2.0
418,065 - Ga0059261_0433 0.62 +0.5
418,075 + Ga0059261_0433 0.66 +1.4
418,075 + Ga0059261_0433 0.66 -0.4
418,076 - Ga0059261_0433 0.66 -0.6
418,076 - Ga0059261_0433 0.66 -0.1
418,169 + +0.4
418,169 + -0.3
418,169 + -0.5
418,169 + +1.1
418,169 + -0.2
418,169 + -0.2
418,170 - -0.0
418,170 - -0.1
418,170 - -1.7
418,171 + +0.1
418,171 + -0.4
418,171 + +0.7
418,171 + -0.4
418,171 + +0.1
418,171 + -0.8
418,171 + +0.1
418,171 + -0.3
418,172 - -0.4
418,172 - +0.2
418,172 - -1.3
418,172 - -0.3
418,172 - +1.2
418,172 - +1.4
418,172 - +0.4
418,172 - +0.0
418,175 + -0.2
418,175 + +0.2
418,175 + +0.5
418,249 + +0.2
418,249 + +0.9
418,249 + +0.3
418,249 + +0.6
418,250 - -1.0
418,250 - -0.9
418,250 - -0.7
418,250 - +0.3
418,250 - -0.6
418,250 - -0.1
418,250 - +0.5
418,250 - +1.8
418,250 - +0.1
418,252 + -0.0
418,252 + +0.2
418,253 - +0.3
418,253 - -0.3
418,253 - -0.2
418,253 - +0.2
418,253 - -1.0
418,378 + +0.3
418,378 + -0.1
418,491 + -0.2
418,491 + +0.0
418,492 - -0.7
418,492 - -0.5
418,492 - -0.4
418,492 - -0.8
418,513 + -1.0
418,513 + +0.4
418,701 + Ga0059261_0434 0.13 +0.2
418,720 + Ga0059261_0434 0.15 +0.3
418,720 + Ga0059261_0434 0.15 +0.6
418,720 + Ga0059261_0434 0.15 +0.0
418,721 - +1.5
418,721 - Ga0059261_0434 0.15 -0.9
418,727 + Ga0059261_0434 0.15 -0.4
418,728 - Ga0059261_0434 0.15 +0.5
418,728 - Ga0059261_0434 0.15 -0.1
418,728 - Ga0059261_0434 0.15 -0.1
418,799 + Ga0059261_0434 0.20 -0.3
418,799 + Ga0059261_0434 0.20 -0.4
418,800 - Ga0059261_0434 0.20 -0.8
418,800 - Ga0059261_0434 0.20 +0.0
418,801 + Ga0059261_0434 0.20 -0.1
418,801 + Ga0059261_0434 0.20 +0.1
418,801 + Ga0059261_0434 0.20 +0.3
418,802 - +0.9
418,802 - Ga0059261_0434 0.20 -0.7
418,802 - Ga0059261_0434 0.20 +0.3
419,003 + Ga0059261_0434 0.35 -0.0
419,003 + Ga0059261_0434 0.35 -0.6
419,003 + Ga0059261_0434 0.35 +0.0
419,003 + Ga0059261_0434 0.35 +0.1
419,004 - Ga0059261_0434 0.35 +0.4
419,004 - Ga0059261_0434 0.35 -0.3
419,004 - Ga0059261_0434 0.35 -0.2
419,004 - Ga0059261_0434 0.35 +0.4
419,059 + Ga0059261_0434 0.39 -0.1
419,059 + Ga0059261_0434 0.39 -0.8
419,059 + Ga0059261_0434 0.39 -0.2
419,059 + Ga0059261_0434 0.39 -0.2
419,060 - Ga0059261_0434 0.39 +0.8
419,060 - Ga0059261_0434 0.39 -1.3
419,060 - Ga0059261_0434 0.39 -1.5
419,060 - +1.5
419,284 + Ga0059261_0434 0.54 -0.3
419,284 + Ga0059261_0434 0.54 +0.3
419,284 + Ga0059261_0434 0.54 +0.1
419,285 - Ga0059261_0434 0.54 +0.2
419,285 - Ga0059261_0434 0.54 -0.7
419,285 - Ga0059261_0434 0.54 -0.0
419,285 - Ga0059261_0434 0.54 -1.1
419,448 - Ga0059261_0434 0.66 -0.4
419,669 + Ga0059261_0434 0.82 +0.3
419,669 + Ga0059261_0434 0.82 +0.9
419,669 + Ga0059261_0434 0.82 -0.0
419,669 + Ga0059261_0434 0.82 +0.1
419,669 + Ga0059261_0434 0.82 +0.2
419,669 + Ga0059261_0434 0.82 -0.3
419,669 + Ga0059261_0434 0.82 -0.5
419,669 + Ga0059261_0434 0.82 -1.0
419,669 + Ga0059261_0434 0.82 -0.7
419,669 + Ga0059261_0434 0.82 -0.8
419,669 + Ga0059261_0434 0.82 +0.0
419,670 - Ga0059261_0434 0.82 -0.5
419,670 - Ga0059261_0434 0.82 -0.5
419,670 - Ga0059261_0434 0.82 -0.1
419,670 - Ga0059261_0434 0.82 -0.4
419,670 - Ga0059261_0434 0.82 +1.1
419,670 - Ga0059261_0434 0.82 -0.0
419,670 - Ga0059261_0434 0.82 -0.1
419,670 - Ga0059261_0434 0.82 -1.1
419,670 - Ga0059261_0434 0.82 +0.7
419,670 - Ga0059261_0434 0.82 -0.5
419,670 - Ga0059261_0434 0.82 -0.5
419,673 + Ga0059261_0434 0.82 +0.0
419,674 - Ga0059261_0434 0.82 +0.2
419,674 - Ga0059261_0434 0.82 +0.2
419,764 + Ga0059261_0434 0.88 +0.2
419,764 + Ga0059261_0434 0.88 -0.0
419,764 + Ga0059261_0434 0.88 -0.2
419,764 + Ga0059261_0434 0.88 +0.8
419,764 + Ga0059261_0434 0.88 +0.3
419,764 + Ga0059261_0434 0.88 +0.8
419,765 - Ga0059261_0434 0.88 -0.1
419,765 - Ga0059261_0434 0.88 -0.5
419,765 - Ga0059261_0434 0.88 -0.4
419,765 - Ga0059261_0434 0.88 -0.1
419,765 - Ga0059261_0434 0.88 +0.4
419,843 + -0.3
419,843 + -0.6
419,843 + -0.6
419,844 - +0.2
419,844 - -0.2
419,844 - +0.3
419,844 - +0.1
419,844 - -0.6
419,844 - +0.7
419,844 - +0.5
419,844 - +0.0
419,844 - -0.5
419,844 - -0.5
419,844 - -1.5
419,844 - +0.2
419,849 + -0.3
419,849 + -0.6
419,849 + +0.5
419,849 + +0.4
419,849 + -1.0
419,849 + +0.4
419,850 - -0.5
419,850 - +0.4
419,883 + -0.2
419,883 + -0.5
419,884 - -1.0
419,987 + +0.4
419,987 + -1.7
419,987 + -0.4
419,988 - -0.1
420,066 + -0.6
420,066 + +0.1
420,276 - -0.2
420,366 + Ga0059261_0435 0.13 +0.2
420,366 + Ga0059261_0435 0.13 +0.2
420,366 + Ga0059261_0435 0.13 -0.5
420,366 + Ga0059261_0435 0.13 +0.1
420,366 + Ga0059261_0435 0.13 +0.1
420,366 + +1.5
420,366 + Ga0059261_0435 0.13 +0.7
420,367 - Ga0059261_0435 0.13 +0.2
420,367 - Ga0059261_0435 0.13 +0.1
420,367 - Ga0059261_0435 0.13 -1.4
420,367 - Ga0059261_0435 0.13 -1.7
420,368 + Ga0059261_0435 0.13 -1.1
420,368 + Ga0059261_0435 0.13 -0.3
420,368 + Ga0059261_0435 0.13 -0.4
420,368 + Ga0059261_0435 0.13 -0.9
420,369 - Ga0059261_0435 0.13 -1.5
420,369 - Ga0059261_0435 0.13 +0.6
420,369 - Ga0059261_0435 0.13 +0.1
420,369 - Ga0059261_0435 0.13 +0.5
420,369 - Ga0059261_0435 0.13 -0.1
420,382 + Ga0059261_0435 0.14 -0.2
420,382 + Ga0059261_0435 0.14 -0.0
420,382 + Ga0059261_0435 0.14 -0.6
420,382 + Ga0059261_0435 0.14 +0.2
420,382 + Ga0059261_0435 0.14 -0.9
420,382 + Ga0059261_0435 0.14 +0.1
420,383 - Ga0059261_0435 0.14 +0.9
420,383 - Ga0059261_0435 0.14 +0.0
420,383 - Ga0059261_0435 0.14 +0.3
420,383 - Ga0059261_0435 0.14 +0.6
420,383 - Ga0059261_0435 0.14 +0.7
420,383 - Ga0059261_0435 0.14 +0.2
420,385 - Ga0059261_0435 0.14 -0.4
420,439 + Ga0059261_0435 0.19 -0.5
420,440 - Ga0059261_0435 0.19 +0.4
420,440 - Ga0059261_0435 0.19 -1.0
420,440 - Ga0059261_0435 0.19 -0.2
420,452 + Ga0059261_0435 0.20 -0.3
420,452 + Ga0059261_0435 0.20 +0.3
420,452 + Ga0059261_0435 0.20 +0.3
420,452 + Ga0059261_0435 0.20 +0.2
420,453 - Ga0059261_0435 0.20 -1.3
420,453 - Ga0059261_0435 0.20 -0.4
420,453 - Ga0059261_0435 0.20 -1.0
420,453 - Ga0059261_0435 0.20 +0.9
420,453 - Ga0059261_0435 0.20 -0.8
420,453 - Ga0059261_0435 0.20 +0.1
420,453 - Ga0059261_0435 0.20 -0.5
420,453 - Ga0059261_0435 0.20 -0.9
420,733 + Ga0059261_0435 0.44 -0.8
420,733 + Ga0059261_0435 0.44 +0.5
420,734 - Ga0059261_0435 0.44 +0.9
420,734 - Ga0059261_0435 0.44 +0.1
420,754 - Ga0059261_0435 0.46 -0.2
420,886 + Ga0059261_0435 0.57 +1.2
420,886 + Ga0059261_0435 0.57 -0.8
420,887 - Ga0059261_0435 0.57 -0.4
420,887 - Ga0059261_0435 0.57 +0.5

Or see this region's nucleotide sequence