Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35500

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35490 and BPHYT_RS35495 are separated by 346 nucleotidesBPHYT_RS35495 and BPHYT_RS35500 are separated by 50 nucleotidesBPHYT_RS35500 and BPHYT_RS35505 are separated by 82 nucleotidesBPHYT_RS35505 and BPHYT_RS35510 are separated by 55 nucleotides BPHYT_RS35490: BPHYT_RS35490 - hypothetical protein, at 3,563,856 to 3,564,416 _RS35490 BPHYT_RS35495: BPHYT_RS35495 - nucleotide pyrophosphohydrolase, at 3,564,763 to 3,565,134 _RS35495 BPHYT_RS35500: BPHYT_RS35500 - major facilitator transporter, at 3,565,185 to 3,566,621 _RS35500 BPHYT_RS35505: BPHYT_RS35505 - short-chain dehydrogenase, at 3,566,704 to 3,567,474 _RS35505 BPHYT_RS35510: BPHYT_RS35510 - hydrolase, at 3,567,530 to 3,568,384 _RS35510 Position (kb) 3565 3566 3567Strain fitness (log2 ratio) -2 -1 0 1at 3564.262 kb on + strand, within BPHYT_RS35490at 3564.472 kb on + strandat 3564.714 kb on - strandat 3564.998 kb on - strand, within BPHYT_RS35495at 3565.362 kb on + strand, within BPHYT_RS35500at 3565.363 kb on - strand, within BPHYT_RS35500at 3565.363 kb on - strand, within BPHYT_RS35500at 3565.881 kb on - strand, within BPHYT_RS35500at 3566.653 kb on - strandat 3566.901 kb on - strand, within BPHYT_RS35505at 3567.187 kb on + strand, within BPHYT_RS35505at 3567.187 kb on + strand, within BPHYT_RS35505

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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3,564,262 + BPHYT_RS35490 0.72 -0.1
3,564,472 + +0.3
3,564,714 - +0.0
3,564,998 - BPHYT_RS35495 0.63 +0.4
3,565,362 + BPHYT_RS35500 0.12 -0.4
3,565,363 - BPHYT_RS35500 0.12 -2.0
3,565,363 - BPHYT_RS35500 0.12 -0.6
3,565,881 - BPHYT_RS35500 0.48 -1.3
3,566,653 - +0.6
3,566,901 - BPHYT_RS35505 0.26 +0.2
3,567,187 + BPHYT_RS35505 0.63 +0.2
3,567,187 + BPHYT_RS35505 0.63 -0.4

Or see this region's nucleotide sequence