Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2956

Experiment: MoYLS4 with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2954 and DvMF_2955 overlap by 4 nucleotidesDvMF_2955 and DvMF_2956 are separated by 13 nucleotidesDvMF_2956 and DvMF_2957 are separated by 346 nucleotides DvMF_2954: DvMF_2954 - protein of unknown function DUF214 (RefSeq), at 3,726,358 to 3,727,689 _2954 DvMF_2955: DvMF_2955 - ABC transporter related (RefSeq), at 3,727,686 to 3,728,438 _2955 DvMF_2956: DvMF_2956 - efflux transporter, RND family, MFP subunit (RefSeq), at 3,728,452 to 3,729,744 _2956 DvMF_2957: DvMF_2957 - hypothetical protein (RefSeq), at 3,730,091 to 3,731,137 _2957 Position (kb) 3728 3729 3730Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 3727.562 kb on - strandat 3727.594 kb on + strandat 3727.940 kb on - strand, within DvMF_2955at 3727.975 kb on - strand, within DvMF_2955at 3728.153 kb on + strand, within DvMF_2955at 3728.234 kb on - strand, within DvMF_2955at 3728.639 kb on - strand, within DvMF_2956at 3728.801 kb on - strand, within DvMF_2956at 3728.811 kb on - strand, within DvMF_2956at 3728.967 kb on - strand, within DvMF_2956at 3729.001 kb on - strand, within DvMF_2956at 3729.003 kb on - strand, within DvMF_2956at 3729.017 kb on - strand, within DvMF_2956at 3729.190 kb on + strand, within DvMF_2956at 3729.260 kb on + strand, within DvMF_2956at 3729.318 kb on - strand, within DvMF_2956at 3729.390 kb on - strand, within DvMF_2956at 3729.416 kb on + strand, within DvMF_2956at 3729.424 kb on - strand, within DvMF_2956at 3729.965 kb on - strandat 3730.478 kb on + strand, within DvMF_2957

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.1 mg/ml
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3,727,562 - -4.6
3,727,594 + -5.2
3,727,940 - DvMF_2955 0.34 -6.5
3,727,975 - DvMF_2955 0.38 -5.8
3,728,153 + DvMF_2955 0.62 -4.9
3,728,234 - DvMF_2955 0.73 -3.5
3,728,639 - DvMF_2956 0.14 -3.1
3,728,801 - DvMF_2956 0.27 -5.9
3,728,811 - DvMF_2956 0.28 -6.8
3,728,967 - DvMF_2956 0.40 -3.7
3,729,001 - DvMF_2956 0.42 -6.6
3,729,003 - DvMF_2956 0.43 -3.6
3,729,017 - DvMF_2956 0.44 -6.1
3,729,190 + DvMF_2956 0.57 -5.0
3,729,260 + DvMF_2956 0.62 -4.7
3,729,318 - DvMF_2956 0.67 -6.6
3,729,390 - DvMF_2956 0.73 -5.7
3,729,416 + DvMF_2956 0.75 -0.8
3,729,424 - DvMF_2956 0.75 -4.6
3,729,965 - -0.0
3,730,478 + DvMF_2957 0.37 +0.2

Or see this region's nucleotide sequence