Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1804

Experiment: MoYLS4 with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1802 and DvMF_1803 are separated by 164 nucleotidesDvMF_1803 and DvMF_1804 are separated by 67 nucleotidesDvMF_1804 and DvMF_1805 are separated by 29 nucleotides DvMF_1802: DvMF_1802 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,202,908 to 2,204,005 _1802 DvMF_1803: DvMF_1803 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 2,204,170 to 2,204,874 _1803 DvMF_1804: DvMF_1804 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 2,204,942 to 2,205,847 _1804 DvMF_1805: DvMF_1805 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 2,205,877 to 2,206,491 _1805 Position (kb) 2204 2205 2206Strain fitness (log2 ratio) -1 0 1at 2203.996 kb on - strandat 2204.074 kb on - strandat 2204.076 kb on + strandat 2204.103 kb on + strandat 2204.111 kb on - strandat 2204.173 kb on - strandat 2204.542 kb on - strand, within DvMF_1803at 2204.599 kb on + strand, within DvMF_1803at 2204.604 kb on - strand, within DvMF_1803at 2204.782 kb on + strand, within DvMF_1803at 2204.945 kb on + strandat 2204.976 kb on - strandat 2205.011 kb on + strandat 2205.061 kb on - strand, within DvMF_1804at 2205.103 kb on + strand, within DvMF_1804at 2205.166 kb on - strand, within DvMF_1804at 2205.248 kb on + strand, within DvMF_1804at 2205.258 kb on + strand, within DvMF_1804at 2205.515 kb on + strand, within DvMF_1804at 2205.568 kb on + strand, within DvMF_1804at 2205.571 kb on - strand, within DvMF_1804at 2205.999 kb on + strand, within DvMF_1805at 2206.065 kb on - strand, within DvMF_1805at 2206.065 kb on - strand, within DvMF_1805at 2206.196 kb on + strand, within DvMF_1805at 2206.238 kb on + strand, within DvMF_1805at 2206.241 kb on - strand, within DvMF_1805at 2206.286 kb on + strand, within DvMF_1805

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.1 mg/ml
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2,203,996 - -0.2
2,204,074 - -0.6
2,204,076 + -0.2
2,204,103 + -0.8
2,204,111 - -1.1
2,204,173 - -1.1
2,204,542 - DvMF_1803 0.53 +0.3
2,204,599 + DvMF_1803 0.61 -0.1
2,204,604 - DvMF_1803 0.62 -0.3
2,204,782 + DvMF_1803 0.87 -0.0
2,204,945 + -0.5
2,204,976 - +0.6
2,205,011 + -0.4
2,205,061 - DvMF_1804 0.13 -0.5
2,205,103 + DvMF_1804 0.18 -1.2
2,205,166 - DvMF_1804 0.25 -0.7
2,205,248 + DvMF_1804 0.34 +0.0
2,205,258 + DvMF_1804 0.35 -0.8
2,205,515 + DvMF_1804 0.63 -0.2
2,205,568 + DvMF_1804 0.69 -0.5
2,205,571 - DvMF_1804 0.69 -0.5
2,205,999 + DvMF_1805 0.20 -0.8
2,206,065 - DvMF_1805 0.31 -0.1
2,206,065 - DvMF_1805 0.31 -0.9
2,206,196 + DvMF_1805 0.52 -0.2
2,206,238 + DvMF_1805 0.59 -1.0
2,206,241 - DvMF_1805 0.59 -0.4
2,206,286 + DvMF_1805 0.67 -0.5

Or see this region's nucleotide sequence