Experiment: MoYLS4 with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1368 and DvMF_1369 are separated by 472 nucleotides DvMF_1369 and DvMF_1370 are separated by 10 nucleotides DvMF_1370 and DvMF_1371 are separated by 495 nucleotides DvMF_1371 and DvMF_1372 are separated by 108 nucleotides
DvMF_1368: DvMF_1368 - glycoside hydrolase family 13 domain protein (RefSeq), at 1,676,884 to 1,677,198
_1368
DvMF_1369: DvMF_1369 - hypothetical protein (RefSeq), at 1,677,671 to 1,678,063
_1369
DvMF_1370: DvMF_1370 - DNA binding domain protein, excisionase family (RefSeq), at 1,678,074 to 1,678,358
_1370
DvMF_1371: DvMF_1371 - no description, at 1,678,854 to 1,678,958
_1371
DvMF_1372: DvMF_1372 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,679,067 to 1,681,502
_1372
Position (kb)
1678
1679 Strain fitness (log2 ratio)
-1
0
1 at 1677.115 kb on + strand, within DvMF_1368 at 1677.562 kb on - strand at 1677.715 kb on + strand, within DvMF_1369 at 1677.738 kb on - strand, within DvMF_1369 at 1678.097 kb on + strand at 1678.248 kb on + strand, within DvMF_1370 at 1678.311 kb on + strand, within DvMF_1370 at 1678.337 kb on + strand at 1678.338 kb on + strand at 1678.345 kb on - strand at 1678.396 kb on + strand at 1678.446 kb on + strand at 1678.613 kb on + strand at 1678.616 kb on - strand at 1678.790 kb on + strand at 1679.204 kb on - strand at 1679.265 kb on + strand at 1679.286 kb on - strand at 1679.325 kb on + strand, within DvMF_1372
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.1 mg/ml remove 1,677,115 + DvMF_1368 0.73 -0.5 1,677,562 - +0.0 1,677,715 + DvMF_1369 0.11 -0.4 1,677,738 - DvMF_1369 0.17 +0.5 1,678,097 + -0.2 1,678,248 + DvMF_1370 0.61 -1.0 1,678,311 + DvMF_1370 0.83 -0.6 1,678,337 + -0.8 1,678,338 + -1.1 1,678,345 - -1.0 1,678,396 + -0.7 1,678,446 + -0.1 1,678,613 + -0.1 1,678,616 - -0.6 1,678,790 + -0.7 1,679,204 - -0.6 1,679,265 + -0.2 1,679,286 - +0.4 1,679,325 + DvMF_1372 0.11 -0.3
Or see this region's nucleotide sequence