Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1139

Experiment: MoYLS4 with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1137 and DvMF_1138 are separated by 5 nucleotidesDvMF_1138 and DvMF_1139 overlap by 1 nucleotidesDvMF_1139 and DvMF_1140 are separated by 164 nucleotides DvMF_1137: DvMF_1137 - orotidine 5'-phosphate decarboxylase (RefSeq), at 1,395,612 to 1,396,364 _1137 DvMF_1138: DvMF_1138 - Guanylate kinase (RefSeq), at 1,396,370 to 1,396,999 _1138 DvMF_1139: DvMF_1139 - hypothetical protein (RefSeq), at 1,396,999 to 1,397,265 _1139 DvMF_1140: DvMF_1140 - hypothetical protein (RefSeq), at 1,397,430 to 1,398,311 _1140 Position (kb) 1396 1397 1398Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1396.012 kb on - strand, within DvMF_1137at 1396.012 kb on - strand, within DvMF_1137at 1396.216 kb on - strand, within DvMF_1137at 1397.177 kb on + strand, within DvMF_1139at 1397.654 kb on + strand, within DvMF_1140at 1397.836 kb on + strand, within DvMF_1140at 1398.244 kb on + strandat 1398.244 kb on + strandat 1398.250 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.1 mg/ml
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1,396,012 - DvMF_1137 0.53 -3.7
1,396,012 - DvMF_1137 0.53 -4.1
1,396,216 - DvMF_1137 0.80 -3.2
1,397,177 + DvMF_1139 0.67 -1.9
1,397,654 + DvMF_1140 0.25 +0.5
1,397,836 + DvMF_1140 0.46 +0.2
1,398,244 + -0.1
1,398,244 + +0.5
1,398,250 - +0.1

Or see this region's nucleotide sequence