Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0933

Experiment: MoYLS4 with Rifampicin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0931 and DvMF_0932 are separated by 10 nucleotidesDvMF_0932 and DvMF_0933 are separated by 2 nucleotidesDvMF_0933 and DvMF_0934 are separated by 103 nucleotides DvMF_0931: DvMF_0931 - molybdopterin oxidoreductase (RefSeq), at 1,128,934 to 1,131,165 _0931 DvMF_0932: DvMF_0932 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,131,176 to 1,131,763 _0932 DvMF_0933: DvMF_0933 - molybdopterin-containing oxidoreductase membrane anchor subunit (RefSeq), at 1,131,766 to 1,132,599 _0933 DvMF_0934: DvMF_0934 - Tetratricopeptide domain protein (RefSeq), at 1,132,703 to 1,133,608 _0934 Position (kb) 1131 1132 1133Strain fitness (log2 ratio) -1 0 1at 1130.780 kb on - strand, within DvMF_0931at 1130.838 kb on + strand, within DvMF_0931at 1130.919 kb on + strand, within DvMF_0931at 1130.919 kb on + strand, within DvMF_0931at 1130.919 kb on + strand, within DvMF_0931at 1130.933 kb on - strand, within DvMF_0931at 1130.963 kb on - strandat 1131.019 kb on + strandat 1131.403 kb on + strand, within DvMF_0932at 1131.404 kb on - strand, within DvMF_0932at 1131.449 kb on - strand, within DvMF_0932at 1131.535 kb on - strand, within DvMF_0932at 1131.646 kb on + strand, within DvMF_0932at 1131.646 kb on + strand, within DvMF_0932at 1131.679 kb on - strand, within DvMF_0932at 1131.756 kb on + strandat 1131.760 kb on - strandat 1131.793 kb on - strandat 1131.835 kb on - strandat 1132.115 kb on + strand, within DvMF_0933at 1132.178 kb on + strand, within DvMF_0933at 1132.178 kb on + strand, within DvMF_0933at 1132.423 kb on + strand, within DvMF_0933at 1132.431 kb on - strand, within DvMF_0933at 1132.510 kb on - strand, within DvMF_0933at 1132.589 kb on + strandat 1132.605 kb on + strandat 1132.694 kb on - strandat 1132.832 kb on + strand, within DvMF_0934at 1132.849 kb on + strand, within DvMF_0934at 1133.067 kb on - strand, within DvMF_0934at 1133.111 kb on + strand, within DvMF_0934at 1133.111 kb on + strand, within DvMF_0934at 1133.111 kb on + strand, within DvMF_0934at 1133.111 kb on + strand, within DvMF_0934at 1133.111 kb on + strand, within DvMF_0934at 1133.119 kb on - strand, within DvMF_0934at 1133.135 kb on + strand, within DvMF_0934

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.1 mg/ml
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1,130,780 - DvMF_0931 0.83 -0.6
1,130,838 + DvMF_0931 0.85 -0.3
1,130,919 + DvMF_0931 0.89 -0.2
1,130,919 + DvMF_0931 0.89 -0.6
1,130,919 + DvMF_0931 0.89 -0.7
1,130,933 - DvMF_0931 0.90 -0.9
1,130,963 - -0.2
1,131,019 + -0.2
1,131,403 + DvMF_0932 0.39 -0.7
1,131,404 - DvMF_0932 0.39 -0.9
1,131,449 - DvMF_0932 0.46 -0.7
1,131,535 - DvMF_0932 0.61 -0.3
1,131,646 + DvMF_0932 0.80 -0.2
1,131,646 + DvMF_0932 0.80 -0.8
1,131,679 - DvMF_0932 0.86 +0.3
1,131,756 + -0.0
1,131,760 - -0.9
1,131,793 - -1.5
1,131,835 - -1.1
1,132,115 + DvMF_0933 0.42 -0.8
1,132,178 + DvMF_0933 0.49 -1.2
1,132,178 + DvMF_0933 0.49 -1.2
1,132,423 + DvMF_0933 0.79 +0.2
1,132,431 - DvMF_0933 0.80 -1.1
1,132,510 - DvMF_0933 0.89 -0.9
1,132,589 + -1.3
1,132,605 + +0.3
1,132,694 - -0.5
1,132,832 + DvMF_0934 0.14 -0.3
1,132,849 + DvMF_0934 0.16 +0.1
1,133,067 - DvMF_0934 0.40 -0.4
1,133,111 + DvMF_0934 0.45 -0.6
1,133,111 + DvMF_0934 0.45 -0.3
1,133,111 + DvMF_0934 0.45 -0.5
1,133,111 + DvMF_0934 0.45 -0.3
1,133,111 + DvMF_0934 0.45 -0.3
1,133,119 - DvMF_0934 0.46 -0.5
1,133,135 + DvMF_0934 0.48 -0.5

Or see this region's nucleotide sequence