Experiment: MoYLS4 with Rifampicin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0231 and DvMF_0232 are separated by 254 nucleotides DvMF_0232 and DvMF_0233 are separated by 31 nucleotides DvMF_0233 and DvMF_0234 are separated by 115 nucleotides DvMF_0234 and DvMF_0235 are separated by 309 nucleotides
DvMF_0231: DvMF_0231 - ATPase associated with various cellular activities AAA_5 (RefSeq), at 258,427 to 259,959
_0231
DvMF_0232: DvMF_0232 - no description, at 260,214 to 260,414
_0232
DvMF_0233: DvMF_0233 - no description, at 260,446 to 260,712
_0233
DvMF_0234: DvMF_0234 - GTP-dependent nucleic acid-binding protein EngD (RefSeq), at 260,828 to 261,928
_0234
DvMF_0235: DvMF_0235 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 262,238 to 262,888
_0235
Position (kb) 260
261
262 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 260.482 kb on - strand, within DvMF_0233 at 260.534 kb on + strand, within DvMF_0233 at 260.564 kb on - strand, within DvMF_0233 at 260.564 kb on - strand, within DvMF_0233 at 260.564 kb on - strand, within DvMF_0233 at 260.647 kb on + strand, within DvMF_0233 at 260.794 kb on - strand at 261.067 kb on + strand, within DvMF_0234 at 261.298 kb on - strand, within DvMF_0234 at 261.311 kb on + strand, within DvMF_0234 at 261.819 kb on - strand at 261.877 kb on + strand at 262.017 kb on - strand at 262.308 kb on + strand, within DvMF_0235 at 262.527 kb on + strand, within DvMF_0235 at 262.670 kb on + strand, within DvMF_0235
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.1 mg/ml remove 260,482 - DvMF_0233 0.13 -0.1 260,534 + DvMF_0233 0.33 -0.8 260,564 - DvMF_0233 0.44 -0.2 260,564 - DvMF_0233 0.44 -0.4 260,564 - DvMF_0233 0.44 -0.3 260,647 + DvMF_0233 0.75 -0.4 260,794 - +0.1 261,067 + DvMF_0234 0.22 -4.2 261,298 - DvMF_0234 0.43 -3.2 261,311 + DvMF_0234 0.44 -3.4 261,819 - -1.9 261,877 + -5.4 262,017 - -0.1 262,308 + DvMF_0235 0.11 -0.6 262,527 + DvMF_0235 0.44 -0.9 262,670 + DvMF_0235 0.66 -0.7
Or see this region's nucleotide sequence