Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3769 and Shew_3770 are separated by 43 nucleotides Shew_3770 and Shew_3771 are separated by 240 nucleotides
Shew_3769: Shew_3769 - hypothetical protein (RefSeq), at 4,489,146 to 4,490,297
_3769
Shew_3770: Shew_3770 - Sel1 domain-containing protein (RefSeq), at 4,490,341 to 4,491,147
_3770
Shew_3771: Shew_3771 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase (RefSeq), at 4,491,388 to 4,492,065
_3771
Position (kb) 4490
4491
4492 Strain fitness (log2 ratio) -1
0
1 at 4489.354 kb on + strand, within Shew_3769 at 4489.362 kb on - strand, within Shew_3769 at 4489.697 kb on + strand, within Shew_3769 at 4489.717 kb on + strand, within Shew_3769 at 4489.786 kb on - strand, within Shew_3769 at 4489.796 kb on + strand, within Shew_3769 at 4489.801 kb on + strand, within Shew_3769 at 4489.806 kb on + strand, within Shew_3769 at 4489.809 kb on - strand, within Shew_3769 at 4489.831 kb on + strand, within Shew_3769 at 4489.839 kb on - strand, within Shew_3769 at 4490.010 kb on - strand, within Shew_3769 at 4490.120 kb on - strand, within Shew_3769 at 4490.252 kb on - strand at 4490.320 kb on + strand at 4490.320 kb on + strand at 4490.515 kb on + strand, within Shew_3770 at 4490.695 kb on - strand, within Shew_3770 at 4490.743 kb on - strand, within Shew_3770 at 4490.831 kb on - strand, within Shew_3770 at 4490.964 kb on - strand, within Shew_3770 at 4490.973 kb on + strand, within Shew_3770 at 4491.373 kb on + strand at 4491.384 kb on + strand at 4491.657 kb on - strand, within Shew_3771 at 4491.759 kb on - strand, within Shew_3771 at 4492.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 4,489,354 + Shew_3769 0.18 +0.2 4,489,362 - Shew_3769 0.19 +0.0 4,489,697 + Shew_3769 0.48 -0.2 4,489,717 + Shew_3769 0.50 -0.2 4,489,786 - Shew_3769 0.56 -0.1 4,489,796 + Shew_3769 0.56 -0.0 4,489,801 + Shew_3769 0.57 +0.1 4,489,806 + Shew_3769 0.57 +0.0 4,489,809 - Shew_3769 0.58 -0.1 4,489,831 + Shew_3769 0.59 +0.4 4,489,839 - Shew_3769 0.60 +0.4 4,490,010 - Shew_3769 0.75 +0.0 4,490,120 - Shew_3769 0.85 -0.1 4,490,252 - +0.4 4,490,320 + -0.4 4,490,320 + +0.9 4,490,515 + Shew_3770 0.22 +0.5 4,490,695 - Shew_3770 0.44 -0.4 4,490,743 - Shew_3770 0.50 -1.0 4,490,831 - Shew_3770 0.61 -0.4 4,490,964 - Shew_3770 0.77 -0.3 4,490,973 + Shew_3770 0.78 -0.5 4,491,373 + +0.2 4,491,384 + +0.4 4,491,657 - Shew_3771 0.40 -0.1 4,491,759 - Shew_3771 0.55 +0.7 4,492,059 - -0.1
Or see this region's nucleotide sequence