Strain Fitness in Shewanella loihica PV-4 around Shew_3769

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,488,367	+		Shew_3768	0.47	-0.2
4,488,384	-		Shew_3768	0.48	+1.5
4,488,384	-		Shew_3768	0.48	-0.1
4,488,458	+		Shew_3768	0.56	+0.3
4,488,696	-		Shew_3768	0.81	+0.1
4,488,876	-				-0.3
4,488,903	-				+0.2
4,489,002	-				+0.3
4,489,046	-				-0.3
4,489,213	+				+0.1
4,489,239	+				+0.0
4,489,354	+		Shew_3769	0.18	+0.2
4,489,362	-		Shew_3769	0.19	+0.0
4,489,697	+		Shew_3769	0.48	-0.2
4,489,717	+		Shew_3769	0.50	-0.2
4,489,786	-		Shew_3769	0.56	-0.1
4,489,796	+		Shew_3769	0.56	-0.0
4,489,801	+		Shew_3769	0.57	+0.1
4,489,806	+		Shew_3769	0.57	+0.0
4,489,809	-		Shew_3769	0.58	-0.1
4,489,831	+		Shew_3769	0.59	+0.4
4,489,839	-		Shew_3769	0.60	+0.4
4,490,010	-		Shew_3769	0.75	+0.0
4,490,120	-		Shew_3769	0.85	-0.1
4,490,252	-				+0.4
4,490,320	+				-0.4
4,490,320	+				+0.9
4,490,515	+		Shew_3770	0.22	+0.5
4,490,695	-		Shew_3770	0.44	-0.4
4,490,743	-		Shew_3770	0.50	-1.0
4,490,831	-		Shew_3770	0.61	-0.4
4,490,964	-		Shew_3770	0.77	-0.3
4,490,973	+		Shew_3770	0.78	-0.5