Strain Fitness in Shewanella loihica PV-4 around Shew_3719

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,424,492	-		Shew_3717	0.53	+0.2
4,424,562	+		Shew_3717	0.63	+0.3
4,424,603	+		Shew_3717	0.69	+0.2
4,424,603	+		Shew_3717	0.69	-0.4
4,424,611	-		Shew_3717	0.70	+0.1
4,424,611	-		Shew_3717	0.70	+0.2
4,424,672	+		Shew_3717	0.80	-0.1
4,424,813	+				+1.8
4,425,098	+		Shew_3718	0.45	+1.4
4,425,495	+				+0.1
4,425,520	+				+0.5
4,425,670	+		Shew_3719	0.40	-0.0
4,425,744	+		Shew_3719	0.56	+0.1
4,425,747	-		Shew_3719	0.56	+1.8
4,425,826	-		Shew_3719	0.73	+0.2
4,425,921	+				-0.2
4,425,927	+				+0.6
4,425,987	+				+0.6
4,426,068	+				-1.0
4,426,113	-				-0.3
4,426,121	+				+0.2
4,426,121	+				+0.9
4,426,121	+				-0.2
4,426,129	-				-0.2
4,426,129	-				-0.5
4,426,191	+				-0.1
4,426,258	+				+0.8
4,426,362	+		Shew_3720	0.15	-0.5
4,426,476	+		Shew_3720	0.24	+0.5
4,426,476	+		Shew_3720	0.24	+0.1
4,426,716	+		Shew_3720	0.42	+3.9
4,426,724	-		Shew_3720	0.42	+0.3
4,426,724	-		Shew_3720	0.42	-0.4
4,426,724	-		Shew_3720	0.42	-0.4
4,426,724	-		Shew_3720	0.42	+0.3
4,426,787	+		Shew_3720	0.47	+0.0