Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3626 and Shew_3627 overlap by 4 nucleotides Shew_3627 and Shew_3628 are separated by 156 nucleotides Shew_3628 and Shew_3629 overlap by 7 nucleotides Shew_3629 and Shew_3630 are separated by 31 nucleotides Shew_3630 and Shew_3631 are separated by 58 nucleotides
Shew_3626: Shew_3626 - hypothetical protein (RefSeq), at 4,326,037 to 4,326,462
_3626
Shew_3627: Shew_3627 - XRE family transcriptional regulator (RefSeq), at 4,326,459 to 4,326,656
_3627
Shew_3628: Shew_3628 - MgtC/SapB transporter (RefSeq), at 4,326,813 to 4,327,295
_3628
Shew_3629: Shew_3629 - competence protein ComF (RefSeq), at 4,327,289 to 4,328,047
_3629
Shew_3630: Shew_3630 - bioH protein (RefSeq), at 4,328,079 to 4,328,858
_3630
Shew_3631: Shew_3631 - hypothetical protein (RefSeq), at 4,328,917 to 4,329,411
_3631
Position (kb) 4327
4328
4329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4326.651 kb on + strand at 4326.917 kb on - strand, within Shew_3628 at 4326.969 kb on - strand, within Shew_3628 at 4327.073 kb on + strand, within Shew_3628 at 4327.525 kb on + strand, within Shew_3629 at 4327.868 kb on + strand, within Shew_3629 at 4328.056 kb on + strand at 4328.349 kb on + strand, within Shew_3630 at 4328.357 kb on - strand, within Shew_3630 at 4328.570 kb on - strand, within Shew_3630 at 4328.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 4,326,651 + -0.1 4,326,917 - Shew_3628 0.22 -0.6 4,326,969 - Shew_3628 0.32 +0.3 4,327,073 + Shew_3628 0.54 +3.2 4,327,525 + Shew_3629 0.31 -0.1 4,327,868 + Shew_3629 0.76 +0.1 4,328,056 + +0.2 4,328,349 + Shew_3630 0.35 -2.6 4,328,357 - Shew_3630 0.36 -3.1 4,328,570 - Shew_3630 0.63 -1.2 4,328,834 - -1.8
Or see this region's nucleotide sequence