Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3526 and Shew_3527 are separated by 117 nucleotides Shew_3527 and Shew_3528 are separated by 143 nucleotides Shew_3528 and Shew_3529 are separated by 281 nucleotides
Shew_3526: Shew_3526 - 3-oxoacyl-(acyl carrier protein) synthase II (RefSeq), at 4,212,835 to 4,214,076
_3526
Shew_3527: Shew_3527 - GCN5-related N-acetyltransferase (RefSeq), at 4,214,194 to 4,214,649
_3527
Shew_3528: Shew_3528 - rhodanese domain-containing protein (RefSeq), at 4,214,793 to 4,215,131
_3528
Shew_3529: Shew_3529 - azoreductase (RefSeq), at 4,215,413 to 4,216,006
_3529
Position (kb) 4214
4215 Strain fitness (log2 ratio) -1
0
1 at 4213.345 kb on - strand, within Shew_3526 at 4213.347 kb on - strand, within Shew_3526 at 4213.499 kb on + strand, within Shew_3526 at 4213.602 kb on + strand, within Shew_3526 at 4213.610 kb on - strand, within Shew_3526 at 4213.610 kb on - strand, within Shew_3526 at 4213.854 kb on - strand, within Shew_3526 at 4213.854 kb on - strand, within Shew_3526 at 4213.887 kb on - strand, within Shew_3526 at 4214.401 kb on - strand, within Shew_3527 at 4214.601 kb on - strand, within Shew_3527 at 4214.672 kb on - strand at 4214.874 kb on - strand, within Shew_3528 at 4214.898 kb on - strand, within Shew_3528 at 4214.964 kb on + strand, within Shew_3528 at 4214.982 kb on - strand, within Shew_3528 at 4215.299 kb on - strand at 4215.299 kb on - strand at 4215.540 kb on + strand, within Shew_3529
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 4,213,345 - Shew_3526 0.41 -0.2 4,213,347 - Shew_3526 0.41 -0.9 4,213,499 + Shew_3526 0.53 -0.4 4,213,602 + Shew_3526 0.62 -0.3 4,213,610 - Shew_3526 0.62 -0.5 4,213,610 - Shew_3526 0.62 -0.4 4,213,854 - Shew_3526 0.82 -0.4 4,213,854 - Shew_3526 0.82 -1.1 4,213,887 - Shew_3526 0.85 +0.1 4,214,401 - Shew_3527 0.45 +0.1 4,214,601 - Shew_3527 0.89 +0.2 4,214,672 - +0.2 4,214,874 - Shew_3528 0.24 +0.1 4,214,898 - Shew_3528 0.31 -0.3 4,214,964 + Shew_3528 0.50 +0.4 4,214,982 - Shew_3528 0.56 -0.2 4,215,299 - +0.6 4,215,299 - -0.3 4,215,540 + Shew_3529 0.21 +1.0
Or see this region's nucleotide sequence