Strain Fitness in Shewanella loihica PV-4 around Shew_3526

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,212,026	+		Shew_3524	0.85	-0.2
4,212,173	-				+0.4
4,212,173	-				+1.2
4,212,173	-				-0.1
4,212,530	+	fabG	Shew_3525	0.58	-0.7
4,212,530	+	fabG	Shew_3525	0.58	-0.4
4,212,530	+	fabG	Shew_3525	0.58	-0.3
4,212,620	-	fabG	Shew_3525	0.70	-0.8
4,212,712	+	fabG	Shew_3525	0.83	-1.2
4,212,983	+		Shew_3526	0.12	-0.5
4,213,078	+		Shew_3526	0.20	-0.3
4,213,109	-		Shew_3526	0.22	+0.4
4,213,178	+		Shew_3526	0.28	-0.7
4,213,345	-		Shew_3526	0.41	-0.2
4,213,347	-		Shew_3526	0.41	-0.9
4,213,499	+		Shew_3526	0.53	-0.4
4,213,602	+		Shew_3526	0.62	-0.3
4,213,610	-		Shew_3526	0.62	-0.5
4,213,610	-		Shew_3526	0.62	-0.4
4,213,854	-		Shew_3526	0.82	-0.4
4,213,854	-		Shew_3526	0.82	-1.1
4,213,887	-		Shew_3526	0.85	+0.1
4,214,401	-		Shew_3527	0.45	+0.1
4,214,601	-		Shew_3527	0.89	+0.2
4,214,672	-				+0.2
4,214,874	-		Shew_3528	0.24	+0.1
4,214,898	-		Shew_3528	0.31	-0.3
4,214,964	+		Shew_3528	0.50	+0.4
4,214,982	-		Shew_3528	0.56	-0.2