Strain Fitness in Shewanella loihica PV-4 around Shew_3515

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,200,090	+		Shew_3514	0.28	-0.4
4,200,124	+		Shew_3514	0.31	-0.0
4,200,124	+		Shew_3514	0.31	-0.1
4,200,132	-		Shew_3514	0.31	-0.1
4,200,178	+		Shew_3514	0.35	+0.2
4,200,273	-		Shew_3514	0.42	+1.4
4,200,841	+		Shew_3514	0.83	-0.8
4,200,841	+		Shew_3514	0.83	+0.0
4,200,849	-		Shew_3514	0.84	-0.1
4,201,145	+		Shew_3515	0.23	-0.3
4,201,258	+		Shew_3515	0.53	-0.7
4,201,266	-		Shew_3515	0.56	-0.0
4,201,266	-		Shew_3515	0.56	-0.5
4,201,266	-		Shew_3515	0.56	-0.4
4,201,266	-		Shew_3515	0.56	-0.4
4,201,366	-		Shew_3515	0.83	-0.6
4,201,618	-		Shew_3516	0.11	+0.2
4,201,750	+		Shew_3516	0.19	-0.1
4,201,849	+		Shew_3516	0.24	-0.6
4,201,865	-		Shew_3516	0.25	-1.7
4,202,179	-		Shew_3516	0.44	+0.6
4,202,235	+		Shew_3516	0.47	-0.4
4,202,235	+		Shew_3516	0.47	-0.6
4,202,243	-		Shew_3516	0.47	+4.5
4,202,243	-		Shew_3516	0.47	+0.0
4,202,406	+		Shew_3516	0.57	-0.7