Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3508 and Shew_3509 are separated by 192 nucleotides Shew_3509 and Shew_3510 overlap by 8 nucleotides Shew_3510 and Shew_3511 overlap by 23 nucleotides
Shew_3508: Shew_3508 - hypothetical protein (RefSeq), at 4,196,058 to 4,196,930
_3508
Shew_3509: Shew_3509 - hypothetical protein (RefSeq), at 4,197,123 to 4,197,857
_3509
Shew_3510: Shew_3510 - phospholipid/glycerol acyltransferase (RefSeq), at 4,197,850 to 4,198,671
_3510
Shew_3511: Shew_3511 - acyl carrier protein, putative (RefSeq), at 4,198,649 to 4,198,903
_3511
Position (kb) 4197
4198 Strain fitness (log2 ratio) -1
0
1 at 4196.218 kb on + strand, within Shew_3508 at 4196.268 kb on + strand, within Shew_3508 at 4196.530 kb on + strand, within Shew_3508 at 4196.587 kb on + strand, within Shew_3508 at 4196.669 kb on + strand, within Shew_3508 at 4197.165 kb on + strand at 4197.372 kb on + strand, within Shew_3509 at 4197.443 kb on - strand, within Shew_3509 at 4197.450 kb on + strand, within Shew_3509 at 4197.855 kb on - strand at 4198.029 kb on - strand, within Shew_3510 at 4198.068 kb on + strand, within Shew_3510 at 4198.315 kb on + strand, within Shew_3510 at 4198.358 kb on + strand, within Shew_3510
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 4,196,218 + Shew_3508 0.18 +0.2 4,196,268 + Shew_3508 0.24 +0.4 4,196,530 + Shew_3508 0.54 +0.1 4,196,587 + Shew_3508 0.61 -0.3 4,196,669 + Shew_3508 0.70 -0.4 4,197,165 + -0.6 4,197,372 + Shew_3509 0.34 -0.4 4,197,443 - Shew_3509 0.44 -0.5 4,197,450 + Shew_3509 0.44 -1.0 4,197,855 - -0.8 4,198,029 - Shew_3510 0.22 -0.6 4,198,068 + Shew_3510 0.27 -0.3 4,198,315 + Shew_3510 0.57 +0.1 4,198,358 + Shew_3510 0.62 -0.6
Or see this region's nucleotide sequence