Strain Fitness in Shewanella loihica PV-4 around Shew_3506

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,192,339	+		Shew_3505	0.30	+0.7
4,192,339	+		Shew_3505	0.30	-0.1
4,192,387	+		Shew_3505	0.34	+0.1
4,192,660	+		Shew_3505	0.59	+0.0
4,192,756	-		Shew_3505	0.68	-0.5
4,192,756	-		Shew_3505	0.68	-0.0
4,192,788	+		Shew_3505	0.71	-0.1
4,192,803	-		Shew_3505	0.72	+0.2
4,192,818	-		Shew_3505	0.73	+0.2
4,192,940	+		Shew_3505	0.85	-0.9
4,193,188	+		Shew_3506	0.12	-0.1
4,193,196	-		Shew_3506	0.14	-0.0
4,193,196	-		Shew_3506	0.14	-1.1
4,193,231	-		Shew_3506	0.19	-0.3
4,193,717	+				-0.0
4,193,954	-				-0.2
4,194,121	+		Shew_3507	0.13	-0.3
4,194,129	-		Shew_3507	0.13	-0.9
4,194,129	-		Shew_3507	0.13	-1.7
4,194,271	+		Shew_3507	0.20	+3.0
4,194,283	+		Shew_3507	0.21	-0.6
4,194,563	+		Shew_3507	0.34	-0.5
4,194,647	-		Shew_3507	0.38	-0.6