Strain Fitness in Shewanella loihica PV-4 around Shew_3469

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,152,258	+		Shew_3468	0.73	-0.1
4,152,462	-		Shew_3468	0.88	+0.3
4,152,505	+				-0.2
4,152,505	+				+0.0
4,152,505	+				-0.5
4,152,505	+				-0.2
4,152,505	+				-0.1
4,152,505	+				+0.0
4,152,505	+				+0.2
4,152,513	-				-0.2
4,152,513	-				+0.1
4,152,513	-				+0.4
4,152,513	-				-0.5
4,152,513	-				+0.2
4,152,513	-				+0.7
4,152,653	-				-0.3
4,153,036	-				-0.1
4,153,171	-				+0.2
4,153,171	-				-0.1
4,153,615	+		Shew_3469	0.71	-0.2
4,153,706	+		Shew_3469	0.86	+0.1
4,153,719	-		Shew_3469	0.89	-0.1
4,153,768	-				+0.2
4,153,861	-				-0.7
4,154,216	+		Shew_3470	0.30	-0.2
4,154,226	+		Shew_3470	0.31	+0.3
4,154,307	+		Shew_3470	0.36	+1.1
4,154,545	+		Shew_3470	0.53	+0.6
4,154,624	-		Shew_3470	0.59	-0.1
4,154,726	+		Shew_3470	0.66	+0.1
4,154,734	-		Shew_3470	0.67	+0.1
4,154,734	-		Shew_3470	0.67	-0.5
4,154,734	-		Shew_3470	0.67	-0.1