Strain Fitness in Shewanella loihica PV-4 around Shew_3358

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,006,676	-		Shew_3357	0.27	-0.3
4,006,754	+		Shew_3357	0.33	+0.1
4,007,006	+		Shew_3357	0.54	+0.0
4,007,086	+		Shew_3357	0.60	-1.2
4,007,109	-		Shew_3357	0.62	+1.1
4,007,155	+		Shew_3357	0.66	+0.9
4,007,327	-		Shew_3357	0.80	-0.3
4,007,375	+		Shew_3357	0.84	+1.0
4,007,462	+				-0.2
4,007,497	+				+0.4
4,007,712	+				+0.1
4,007,925	-		Shew_3358	0.21	-0.8
4,008,122	+		Shew_3358	0.36	-0.4
4,008,328	+		Shew_3358	0.52	-0.2
4,008,605	+		Shew_3358	0.74	-0.4
4,008,675	+		Shew_3358	0.80	-1.1
4,008,680	+		Shew_3358	0.80	+0.3
4,008,740	-		Shew_3358	0.85	-0.7
4,008,956	+				-0.0
4,009,048	+				-0.0
4,009,422	+		Shew_3359	0.63	+0.4
4,009,775	+		Shew_3360	0.30	-0.2
4,009,775	+		Shew_3360	0.30	-0.2
4,009,783	-		Shew_3360	0.34	-0.1
4,009,783	-		Shew_3360	0.34	+0.4
4,009,864	-		Shew_3360	0.79	-0.1
4,009,866	+		Shew_3360	0.80	+0.9