Strain Fitness in Shewanella loihica PV-4 around Shew_3348

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,992,486	+		Shew_3347	0.55	-0.1
3,992,559	+		Shew_3347	0.59	+0.6
3,992,567	-		Shew_3347	0.59	+0.2
3,992,615	+		Shew_3347	0.62	+0.4
3,992,623	-		Shew_3347	0.62	+2.5
3,993,344	+				-0.2
3,993,344	+				-0.1
3,993,352	-				+0.1
3,993,533	-		Shew_3348	0.18	-0.4
3,993,661	+		Shew_3348	0.31	-0.4
3,993,927	-		Shew_3348	0.59	-0.1
3,993,992	+		Shew_3348	0.66	+0.2
3,994,079	-		Shew_3348	0.75	+0.6
3,994,163	+		Shew_3348	0.84	-0.6
3,994,256	+				-0.1
3,994,264	-				+0.1
3,994,264	-				-0.1
3,994,334	-				+0.1
3,994,530	+		Shew_3349	0.32	-0.1
3,994,617	-		Shew_3349	0.47	-0.4
3,994,695	-		Shew_3349	0.61	-0.1
3,994,787	+		Shew_3349	0.77	-0.5
3,994,803	+		Shew_3349	0.79	-1.5
3,995,135	-				-0.1
3,995,300	+		Shew_3350	0.16	+0.4