Strain Fitness in Shewanella loihica PV-4 around Shew_3226

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,848,197	+		Shew_3225	0.11	+2.0
3,848,753	-		Shew_3225	0.70	+2.3
3,848,866	+		Shew_3225	0.82	+2.4
3,848,956	+				+2.5
3,848,956	+				+2.4
3,849,099	+				-1.6
3,849,306	-		Shew_3226	0.16	-0.1
3,849,454	-		Shew_3226	0.25	-0.2
3,849,551	-		Shew_3226	0.31	-0.8
3,849,623	+		Shew_3226	0.35	-0.3
3,849,681	-		Shew_3226	0.39	-0.2
3,849,760	-		Shew_3226	0.43	-1.2
3,850,232	-		Shew_3226	0.72	-0.1
3,850,369	-		Shew_3226	0.81	-0.1
3,850,593	-				+0.0
3,850,798	+				+0.1
3,851,264	+		Shew_3227	0.21	-0.1
3,851,331	-		Shew_3227	0.24	+0.0
3,851,475	+		Shew_3227	0.30	+0.1
3,851,543	+		Shew_3227	0.33	-0.3
3,851,546	-		Shew_3227	0.33	-0.4
3,851,622	+		Shew_3227	0.36	+0.1