Strain Fitness in Shewanella loihica PV-4 around Shew_3198

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,808,775	-				+0.1
3,808,910	-				+0.2
3,809,252	+		Shew_3197	0.55	+0.3
3,809,279	+		Shew_3197	0.60	+0.2
3,809,287	-		Shew_3197	0.61	+4.0
3,809,582	+				-0.9
3,810,604	+				+1.3
3,810,604	+				+1.3
3,810,619	-				+1.2
3,810,726	+				+0.0
3,810,740	+				+0.6
3,810,755	-				-0.2
3,810,914	-		Shew_3199	0.14	+0.4
3,811,451	-		Shew_3199	0.66	-0.0
3,811,483	+		Shew_3199	0.69	+0.1
3,811,546	-		Shew_3199	0.75	-0.1
3,811,614	-		Shew_3199	0.82	+0.9
3,811,614	-		Shew_3199	0.82	+0.5
3,811,614	-		Shew_3199	0.82	+0.7