Strain Fitness in Shewanella loihica PV-4 around Shew_3098

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,678,302	+		Shew_3097	0.61	+0.1
3,678,310	-		Shew_3097	0.61	-0.3
3,678,310	-		Shew_3097	0.61	+0.5
3,678,310	-		Shew_3097	0.61	-0.1
3,678,310	-		Shew_3097	0.61	+0.6
3,678,595	-		Shew_3097	0.74	-0.0
3,678,672	+		Shew_3097	0.78	+0.3
3,678,672	+		Shew_3097	0.78	-0.1
3,678,672	+		Shew_3097	0.78	+0.2
3,678,680	-		Shew_3097	0.78	+0.6
3,678,680	-		Shew_3097	0.78	+0.1
3,678,798	+		Shew_3097	0.84	-0.1
3,678,851	+		Shew_3097	0.86	+0.4
3,678,859	-		Shew_3097	0.86	+0.0
3,679,261	+				-0.4
3,679,266	+				+0.0
3,679,353	-				+0.3
3,679,446	+		Shew_3098	0.14	-0.8
3,679,680	-		Shew_3098	0.36	+0.1
3,679,892	-		Shew_3098	0.57	-0.6
3,679,926	-		Shew_3098	0.60	-0.2
3,680,115	-		Shew_3098	0.78	+0.6
3,680,141	+		Shew_3098	0.81	-0.5
3,680,149	-		Shew_3098	0.81	-0.4
3,680,149	-		Shew_3098	0.81	-0.6
3,680,918	-		Shew_3099	0.77	+0.6
3,681,019	-				-2.0
3,681,074	+				+1.0
3,681,105	-		Shew_3100	0.12	-0.1