Strain Fitness in Shewanella loihica PV-4 around Shew_2637
Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 5-Hydroxymethylfurfural 5 mM |
---|---|---|---|---|---|
remove | |||||
3,111,504 | + | +0.8 | |||
3,111,525 | + | +0.1 | |||
3,111,783 | + | +3.1 | |||
3,112,140 | - | Shew_2637 | 0.23 | +2.8 | |
3,112,644 | - | Shew_2637 | 0.42 | +2.6 | |
3,112,651 | + | Shew_2637 | 0.43 | +2.8 | |
3,113,164 | + | Shew_2637 | 0.63 | +4.3 | |
3,113,283 | - | Shew_2637 | 0.67 | +3.7 | |
3,113,384 | - | Shew_2637 | 0.71 | +3.5 | |
3,113,597 | + | Shew_2637 | 0.79 | +2.9 |
Or see this region's nucleotide sequence