Strain Fitness in Shewanella loihica PV-4 around Shew_2597

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,063,901	-				-1.1
3,064,022	+				+0.6
3,064,029	+				-0.0
3,064,029	+				-0.0
3,064,029	+				+0.3
3,064,029	+				+0.2
3,064,029	+				-0.4
3,064,029	+				+0.5
3,064,029	+				+0.1
3,064,029	+				+0.2
3,064,037	-				+0.0
3,064,037	-				-0.4
3,064,037	-				+0.6
3,064,037	-				-0.3
3,064,037	-				+0.3
3,064,037	-				-0.3
3,064,064	+				+0.2
3,064,064	+				+0.2
3,064,147	-		Shew_2597	0.19	-0.8
3,064,239	+		Shew_2597	0.32	-0.5
3,064,239	+		Shew_2597	0.32	+0.3
3,064,239	+		Shew_2597	0.32	+0.0
3,064,246	+		Shew_2597	0.33	-0.6
3,064,247	-		Shew_2597	0.33	-0.9
3,064,254	-		Shew_2597	0.34	+0.4
3,064,377	+		Shew_2597	0.51	-0.8
3,064,615	-		Shew_2597	0.85	+0.2
3,064,687	-				+0.7
3,064,865	-				-0.5
3,064,988	-				-0.5
3,065,026	+				+0.3
3,065,032	+				+0.2
3,065,034	-				+0.1
3,065,034	-				+0.1
3,065,045	+				+0.2
3,065,053	-				+0.6
3,065,058	-				+0.5
3,065,058	-				+0.9
3,065,131	+		Shew_2598	0.14	+0.8
3,065,344	+		Shew_2598	0.67	+0.0
3,065,362	-		Shew_2598	0.71	-0.6
3,065,479	+				+0.4
3,065,634	+				+0.5
3,065,654	+				+0.7
3,065,670	-				+0.2