Strain Fitness in Shewanella loihica PV-4 around Shew_2583

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,046,856	+		Shew_2582	0.81	+0.2
3,046,964	-		Shew_2582	0.88	+1.0
3,047,044	+				+0.5
3,047,138	+				+0.2
3,048,641	+		Shew_2584	0.16	+2.2
3,048,678	+		Shew_2584	0.21	+2.2
3,048,684	-		Shew_2584	0.22	+2.1
3,048,746	-		Shew_2584	0.30	+1.8
3,048,768	+		Shew_2584	0.33	+2.0
3,048,835	-		Shew_2584	0.42	+2.1
3,049,039	+		Shew_2584	0.69	+2.2
3,049,182	-		Shew_2584	0.88	+1.7
3,049,208	+				+2.3
3,049,208	+				+2.1
3,049,209	+				+2.0
3,049,214	+				+1.1
3,049,278	+				+2.2
3,049,350	+				+2.1
3,049,358	-				+1.6
3,049,358	-				+1.4
3,049,386	+				+0.4
3,049,396	+				-0.1
3,049,405	-				-0.4
3,049,405	-				-0.5
3,049,411	+				-0.0
3,049,411	+				+0.9
3,049,411	+				+0.7
3,049,418	+				+0.2
3,049,419	-				+0.1
3,049,419	-				-0.6
3,049,419	-				-2.6
3,049,419	-				-0.0
3,049,426	-				+0.0
3,049,426	-				-0.6
3,049,426	-				+1.1