Strain Fitness in Shewanella loihica PV-4 around Shew_0755

Experiment: 5-Hydroxymethylfurfural 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpgk and Shew_0755 are separated by 153 nucleotidesShew_0755 and Shew_0756 are separated by 211 nucleotides Shew_0754: pgk - phosphoglycerate kinase (RefSeq), at 855,530 to 856,705 pgk Shew_0755: Shew_0755 - fructose-1,6-bisphosphate aldolase (RefSeq), at 856,859 to 857,923 _0755 Shew_0756: Shew_0756 - hypothetical protein (RefSeq), at 858,135 to 858,875 _0756 Position (kb) 856 857 858Strain fitness (log2 ratio) -1 0 1 2 3 4at 857.257 kb on + strand, within Shew_0755at 857.265 kb on - strand, within Shew_0755at 857.808 kb on - strand, within Shew_0755at 857.878 kb on + strandat 857.891 kb on - strandat 858.583 kb on - strand, within Shew_0756at 858.629 kb on + strand, within Shew_0756

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
remove
857,257 + Shew_0755 0.37 +4.1
857,265 - Shew_0755 0.38 +3.5
857,808 - Shew_0755 0.89 +4.1
857,878 + +4.4
857,891 - +4.0
858,583 - Shew_0756 0.60 -0.6
858,629 + Shew_0756 0.67 +0.3

Or see this region's nucleotide sequence