Strain Fitness in Shewanella loihica PV-4 around Shew_0738

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0737 and Shew_0738 are separated by 136 nucleotidesShew_0738 and Shew_0739 are separated by 410 nucleotides Shew_0737: Shew_0737 - MarR family transcriptional regulator (RefSeq), at 838,596 to 839,564 _0737 Shew_0738: Shew_0738 - NTPase (RefSeq), at 839,701 to 840,318 _0738 Shew_0739: Shew_0739 - aromatic amino acid permease (RefSeq), at 840,729 to 842,000 _0739 Position (kb) 839 840 841Strain fitness (log2 ratio) -1 0 1at 838.799 kb on - strand, within Shew_0737at 838.911 kb on + strand, within Shew_0737at 839.083 kb on + strand, within Shew_0737at 839.086 kb on - strand, within Shew_0737at 839.096 kb on - strand, within Shew_0737at 839.144 kb on + strand, within Shew_0737at 839.157 kb on - strand, within Shew_0737at 839.228 kb on - strand, within Shew_0737at 839.445 kb on - strand, within Shew_0737at 839.445 kb on - strand, within Shew_0737at 839.670 kb on - strandat 839.675 kb on - strandat 839.690 kb on - strandat 839.862 kb on + strand, within Shew_0738at 840.257 kb on - strandat 840.410 kb on + strandat 841.033 kb on - strand, within Shew_0739at 841.065 kb on - strand, within Shew_0739at 841.078 kb on - strand, within Shew_0739

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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838,799 - Shew_0737 0.21 +0.4
838,911 + Shew_0737 0.33 +0.2
839,083 + Shew_0737 0.50 -0.7
839,086 - Shew_0737 0.51 -0.6
839,096 - Shew_0737 0.52 +0.1
839,144 + Shew_0737 0.57 -0.0
839,157 - Shew_0737 0.58 +0.2
839,228 - Shew_0737 0.65 +0.3
839,445 - Shew_0737 0.88 +0.2
839,445 - Shew_0737 0.88 +0.4
839,670 - +0.3
839,675 - +0.1
839,690 - +0.7
839,862 + Shew_0738 0.26 -1.0
840,257 - -0.1
840,410 + -1.6
841,033 - Shew_0739 0.24 +0.2
841,065 - Shew_0739 0.26 -0.4
841,078 - Shew_0739 0.27 +0.3

Or see this region's nucleotide sequence