Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0677 and Shew_0678 are separated by 195 nucleotides Shew_0678 and Shew_0679 are separated by 64 nucleotides Shew_0679 and Shew_0680 are separated by 87 nucleotides
Shew_0677: Shew_0677 - hypothetical protein (RefSeq), at 771,168 to 772,799
_0677
Shew_0678: Shew_0678 - protoporphyrinogen oxidase (RefSeq), at 772,995 to 773,516
_0678
Shew_0679: Shew_0679 - hypothetical protein (RefSeq), at 773,581 to 774,105
_0679
Shew_0680: Shew_0680 - LysR family transcriptional regulator (RefSeq), at 774,193 to 775,065
_0680
Position (kb) 772
773
774 Strain fitness (log2 ratio) -1
0
1 at 772.309 kb on - strand, within Shew_0677 at 772.339 kb on - strand, within Shew_0677 at 772.345 kb on + strand, within Shew_0677 at 772.562 kb on - strand, within Shew_0677 at 772.719 kb on + strand at 772.724 kb on + strand at 772.727 kb on - strand at 772.732 kb on - strand at 772.754 kb on - strand at 772.754 kb on - strand at 772.761 kb on - strand at 773.038 kb on + strand at 773.046 kb on - strand at 773.046 kb on - strand at 773.046 kb on - strand at 773.046 kb on - strand at 773.046 kb on - strand at 773.262 kb on - strand, within Shew_0678 at 773.262 kb on - strand, within Shew_0678 at 773.486 kb on + strand at 773.577 kb on - strand at 774.011 kb on + strand, within Shew_0679 at 774.011 kb on + strand, within Shew_0679 at 774.110 kb on + strand at 774.140 kb on - strand at 774.141 kb on - strand at 774.143 kb on + strand at 774.238 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 772,309 - Shew_0677 0.70 -0.6 772,339 - Shew_0677 0.72 +0.1 772,345 + Shew_0677 0.72 +0.3 772,562 - Shew_0677 0.85 +0.2 772,719 + +0.3 772,724 + +0.3 772,727 - -0.3 772,732 - -0.1 772,754 - -0.0 772,754 - -0.1 772,761 - -0.1 773,038 + +0.7 773,046 - -0.1 773,046 - -0.1 773,046 - -0.7 773,046 - -0.1 773,046 - +0.2 773,262 - Shew_0678 0.51 -0.7 773,262 - Shew_0678 0.51 -0.2 773,486 + +0.1 773,577 - -0.1 774,011 + Shew_0679 0.82 -0.7 774,011 + Shew_0679 0.82 +0.1 774,110 + -0.1 774,140 - -0.1 774,141 - -0.0 774,143 + +0.0 774,238 + -0.0
Or see this region's nucleotide sequence