Strain Fitness in Shewanella loihica PV-4 around Shew_0665

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
754,430	-		Shew_0664	0.48	-0.1
754,471	-		Shew_0664	0.52	-0.3
754,499	-		Shew_0664	0.54	-0.5
754,795	-		Shew_0664	0.79	-0.4
754,811	+		Shew_0664	0.81	+0.3
754,811	+		Shew_0664	0.81	+0.0
754,819	-		Shew_0664	0.81	-0.0
755,052	+				-0.0
755,147	-				-0.0
755,351	+				-2.4
755,397	+				-0.7
755,397	+				-0.6
755,442	+				-1.2
755,450	-				-1.7
755,457	-				-1.6
755,504	-				-2.0
755,504	-				-1.1
755,712	-		Shew_0665	0.19	-2.3
755,872	+		Shew_0665	0.28	-0.4
755,963	-		Shew_0665	0.33	-1.4
755,965	+		Shew_0665	0.33	-1.6
756,409	-		Shew_0665	0.58	-2.6
756,514	+		Shew_0665	0.64	-1.5
756,545	-		Shew_0665	0.66	-1.3
756,948	+		Shew_0665	0.88	-2.0
757,263	+				-1.4
757,378	-				-1.9
757,524	-		Shew_0666	0.17	-2.1
757,614	+		Shew_0666	0.23	-2.0
757,867	+		Shew_0666	0.37	-1.0