Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0500 and Shew_0501 are separated by 202 nucleotides Shew_0501 and Shew_0502 are separated by 9 nucleotides Shew_0502 and Shew_0503 are separated by 5 nucleotides
Shew_0500: Shew_0500 - hypothetical protein (RefSeq), at 559,225 to 560,241
_0500
Shew_0501: Shew_0501 - hypothetical protein (RefSeq), at 560,444 to 560,728
_0501
Shew_0502: Shew_0502 - hypothetical protein (RefSeq), at 560,738 to 561,265
_0502
Shew_0503: Shew_0503 - thioredoxin domain-containing protein (RefSeq), at 561,271 to 561,612
_0503
Position (kb) 560
561 Strain fitness (log2 ratio) -1
0
1 at 559.472 kb on + strand, within Shew_0500 at 559.980 kb on - strand, within Shew_0500 at 560.254 kb on + strand at 560.257 kb on - strand at 560.272 kb on - strand at 560.294 kb on + strand at 560.487 kb on + strand, within Shew_0501 at 560.497 kb on + strand, within Shew_0501 at 560.699 kb on + strand, within Shew_0501 at 560.707 kb on - strand at 561.393 kb on - strand, within Shew_0503 at 561.401 kb on - strand, within Shew_0503 at 561.615 kb on + strand at 561.621 kb on + strand at 561.623 kb on - strand at 561.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 559,472 + Shew_0500 0.24 +0.5 559,980 - Shew_0500 0.74 +0.5 560,254 + +0.7 560,257 - -0.2 560,272 - -0.7 560,294 + +0.1 560,487 + Shew_0501 0.15 +0.0 560,497 + Shew_0501 0.19 -0.2 560,699 + Shew_0501 0.89 -0.8 560,707 - -0.2 561,393 - Shew_0503 0.36 -0.2 561,401 - Shew_0503 0.38 -1.7 561,615 + -0.0 561,621 + +0.4 561,623 - -0.1 561,678 - +0.3
Or see this region's nucleotide sequence