Strain Fitness in Shewanella loihica PV-4 around Shew_0496

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
552,284	-		Shew_0495	0.43	+0.3
552,763	-				+0.1
553,116	-				-0.5
553,123	+				-1.6
553,344	-		Shew_0496	0.22	+0.1
553,354	-		Shew_0496	0.23	-0.0
553,458	+		Shew_0496	0.30	-0.1
553,580	+		Shew_0496	0.39	+0.3
553,773	+		Shew_0496	0.53	+4.5
553,870	-		Shew_0496	0.60	+0.5
554,021	-		Shew_0496	0.71	+0.4
554,021	-		Shew_0496	0.71	-0.1
554,450	+				-0.2
554,539	-				+0.6
554,573	+				+0.3
554,670	+				+0.7
554,737	+				-0.4
555,009	+				+0.7
555,036	+				-0.2
555,049	-				-0.1
555,049	-				+0.0
555,202	-				+0.2