Strain Fitness in Shewanella loihica PV-4 around Shew_0118

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
128,324	+				+0.1
128,349	+				+0.2
128,526	-		Shew_0117	0.16	-0.5
128,534	-		Shew_0117	0.17	-1.3
128,568	+		Shew_0117	0.21	-0.4
128,568	+		Shew_0117	0.21	+0.2
128,571	-		Shew_0117	0.21	+0.1
128,573	+		Shew_0117	0.21	-0.3
128,573	+		Shew_0117	0.21	-0.1
128,573	+		Shew_0117	0.21	+0.4
128,576	-		Shew_0117	0.22	-1.7
128,576	-		Shew_0117	0.22	-0.3
128,576	-		Shew_0117	0.22	-0.3
128,581	-		Shew_0117	0.22	-0.7
128,581	-		Shew_0117	0.22	+0.5
128,581	-		Shew_0117	0.22	-0.6
128,581	-		Shew_0117	0.22	+0.1
128,603	+		Shew_0117	0.25	-0.1
128,904	-		Shew_0117	0.58	+0.4
128,930	+		Shew_0117	0.61	-0.5
128,943	+		Shew_0117	0.62	-0.3
129,133	+		Shew_0117	0.83	+0.1
129,209	-				+0.2
129,254	+				-0.1
129,312	+				+0.4
129,335	-				+0.3
129,392	-				+0.2
129,506	+		Shew_0118	0.21	-0.2
129,514	-		Shew_0118	0.22	-0.1
129,514	-		Shew_0118	0.22	-0.1
129,514	-		Shew_0118	0.22	-0.5
129,611	+		Shew_0118	0.32	-0.2
129,681	+		Shew_0118	0.39	-0.9
129,797	-		Shew_0118	0.51	+0.2
129,993	+		Shew_0118	0.71	+0.0
130,029	+		Shew_0118	0.75	-0.1
130,201	-				-0.6
130,244	-				+0.3
130,246	-				+0.7
130,256	-				+0.1
130,293	-				+0.1
130,485	-		Shew_0119	0.38	-0.1
130,509	-		Shew_0119	0.42	+0.0
130,536	+		Shew_0119	0.47	+0.1
130,616	+		Shew_0119	0.61	-0.7
130,646	-		Shew_0119	0.67	+0.2
131,161	+		Shew_0120	0.21	+0.3
131,258	-		Shew_0120	0.34	+0.2