Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0113 and Shew_0114 are separated by 21 nucleotides Shew_0114 and Shew_0115 overlap by 4 nucleotides Shew_0115 and Shew_0116 are separated by 163 nucleotides
Shew_0113: Shew_0113 - CheA signal transduction histidine kinase (RefSeq), at 124,836 to 126,896
_0113
Shew_0114: Shew_0114 - response regulator receiver protein (RefSeq), at 126,918 to 127,280
_0114
Shew_0115: Shew_0115 - hypothetical protein (RefSeq), at 127,277 to 127,576
_0115
Shew_0116: Shew_0116 - electron transport protein SCO1/SenC (RefSeq), at 127,740 to 128,375
_0116
Position (kb) 126
127
128 Strain fitness (log2 ratio) -1
0
1 at 126.187 kb on + strand, within Shew_0113 at 126.223 kb on + strand, within Shew_0113 at 126.485 kb on + strand, within Shew_0113 at 126.551 kb on + strand, within Shew_0113 at 126.842 kb on + strand at 126.921 kb on + strand at 126.921 kb on + strand at 126.974 kb on - strand, within Shew_0114 at 127.124 kb on + strand, within Shew_0114 at 127.207 kb on - strand, within Shew_0114 at 127.228 kb on - strand, within Shew_0114 at 127.350 kb on - strand, within Shew_0115 at 127.817 kb on + strand, within Shew_0116 at 127.874 kb on - strand, within Shew_0116 at 127.933 kb on + strand, within Shew_0116 at 128.238 kb on + strand, within Shew_0116 at 128.260 kb on - strand, within Shew_0116
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 126,187 + Shew_0113 0.66 +0.3 126,223 + Shew_0113 0.67 -0.4 126,485 + Shew_0113 0.80 -0.0 126,551 + Shew_0113 0.83 +0.3 126,842 + +0.0 126,921 + -0.3 126,921 + -1.3 126,974 - Shew_0114 0.15 +0.1 127,124 + Shew_0114 0.57 -0.5 127,207 - Shew_0114 0.80 +0.0 127,228 - Shew_0114 0.85 +0.2 127,350 - Shew_0115 0.24 -0.6 127,817 + Shew_0116 0.12 -0.5 127,874 - Shew_0116 0.21 -0.3 127,933 + Shew_0116 0.30 +0.2 128,238 + Shew_0116 0.78 +0.1 128,260 - Shew_0116 0.82 -0.1
Or see this region's nucleotide sequence