Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0035 and Shew_0036 are separated by 89 nucleotides Shew_0036 and Shew_0037 are separated by 92 nucleotides
Shew_0035: Shew_0035 - putative lipoprotein (RefSeq), at 40,708 to 41,478
_0035
Shew_0036: Shew_0036 - phosphoesterase, PA-phosphatase related (RefSeq), at 41,568 to 42,389
_0036
Shew_0037: Shew_0037 - phosphoesterase, PA-phosphatase related (RefSeq), at 42,482 to 43,300
_0037
Position (kb) 41
42
43 Strain fitness (log2 ratio) -1
0
1 at 40.699 kb on - strand at 40.779 kb on - strand at 40.904 kb on - strand, within Shew_0035 at 40.906 kb on + strand, within Shew_0035 at 40.976 kb on - strand, within Shew_0035 at 41.186 kb on + strand, within Shew_0035 at 41.253 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.335 kb on - strand, within Shew_0035 at 41.344 kb on + strand, within Shew_0035 at 41.349 kb on + strand, within Shew_0035 at 41.407 kb on - strand at 41.479 kb on + strand at 41.549 kb on + strand at 41.565 kb on + strand at 41.611 kb on - strand at 41.808 kb on + strand, within Shew_0036 at 41.840 kb on + strand, within Shew_0036 at 41.908 kb on + strand, within Shew_0036 at 42.161 kb on + strand, within Shew_0036 at 42.218 kb on + strand, within Shew_0036 at 42.279 kb on + strand, within Shew_0036 at 42.372 kb on - strand at 42.462 kb on + strand at 42.513 kb on - strand at 42.637 kb on + strand, within Shew_0037 at 42.677 kb on - strand, within Shew_0037 at 42.798 kb on - strand, within Shew_0037 at 42.840 kb on - strand, within Shew_0037 at 42.869 kb on + strand, within Shew_0037 at 43.138 kb on - strand, within Shew_0037 at 43.192 kb on - strand, within Shew_0037
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 40,699 - +1.0 40,779 - -0.0 40,904 - Shew_0035 0.25 -0.2 40,906 + Shew_0035 0.26 -0.4 40,976 - Shew_0035 0.35 +0.0 41,186 + Shew_0035 0.62 -0.2 41,253 + Shew_0035 0.71 -0.1 41,334 + Shew_0035 0.81 -0.1 41,334 + Shew_0035 0.81 -0.3 41,334 + Shew_0035 0.81 +0.1 41,335 - Shew_0035 0.81 -0.0 41,344 + Shew_0035 0.82 -0.0 41,349 + Shew_0035 0.83 +0.2 41,407 - +0.3 41,479 + +0.1 41,549 + +0.1 41,565 + +0.1 41,611 - -0.0 41,808 + Shew_0036 0.29 +1.6 41,840 + Shew_0036 0.33 +0.0 41,908 + Shew_0036 0.41 -0.3 42,161 + Shew_0036 0.72 -0.2 42,218 + Shew_0036 0.79 -0.3 42,279 + Shew_0036 0.86 -1.2 42,372 - +0.1 42,462 + -0.2 42,513 - -0.5 42,637 + Shew_0037 0.19 -0.5 42,677 - Shew_0037 0.24 -0.5 42,798 - Shew_0037 0.39 -0.0 42,840 - Shew_0037 0.44 -0.1 42,869 + Shew_0037 0.47 -1.0 43,138 - Shew_0037 0.80 -0.1 43,192 - Shew_0037 0.87 +0.1
Or see this region's nucleotide sequence