Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0896

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0895 and Dshi_0896 are separated by 9 nucleotidesDshi_0896 and Dshi_0897 overlap by 1 nucleotides Dshi_0895: Dshi_0895 - peptidase S1 and S6 chymotrypsin/Hap (RefSeq), at 912,355 to 914,220 _0895 Dshi_0896: Dshi_0896 - hypothetical protein (RefSeq), at 914,230 to 915,495 _0896 Dshi_0897: Dshi_0897 - virulence protein SrfB (RefSeq), at 915,495 to 918,620 _0897 Position (kb) 914 915 916Strain fitness (log2 ratio) -2 -1 0 1 2at 913.235 kb on + strand, within Dshi_0895at 913.246 kb on + strand, within Dshi_0895at 913.379 kb on + strand, within Dshi_0895at 913.400 kb on - strand, within Dshi_0895at 913.494 kb on + strand, within Dshi_0895at 913.543 kb on - strand, within Dshi_0895at 913.566 kb on + strand, within Dshi_0895at 913.587 kb on - strand, within Dshi_0895at 913.647 kb on + strand, within Dshi_0895at 913.708 kb on - strand, within Dshi_0895at 913.884 kb on + strand, within Dshi_0895at 913.902 kb on + strand, within Dshi_0895at 913.957 kb on + strand, within Dshi_0895at 913.983 kb on - strand, within Dshi_0895at 913.986 kb on + strand, within Dshi_0895at 914.032 kb on + strand, within Dshi_0895at 914.050 kb on - strandat 914.255 kb on - strandat 914.300 kb on + strandat 914.300 kb on + strandat 914.367 kb on + strand, within Dshi_0896at 914.526 kb on - strand, within Dshi_0896at 914.563 kb on + strand, within Dshi_0896at 914.580 kb on + strand, within Dshi_0896at 914.580 kb on + strand, within Dshi_0896at 914.646 kb on - strand, within Dshi_0896at 914.799 kb on + strandat 914.799 kb on + strand, within Dshi_0896at 914.916 kb on + strand, within Dshi_0896at 914.916 kb on + strand, within Dshi_0896at 915.162 kb on + strand, within Dshi_0896at 915.170 kb on - strand, within Dshi_0896at 915.362 kb on - strand, within Dshi_0896at 915.429 kb on - strandat 915.448 kb on + strandat 915.479 kb on - strandat 915.498 kb on - strandat 915.662 kb on - strandat 915.675 kb on + strandat 915.683 kb on - strandat 915.769 kb on + strandat 915.777 kb on - strandat 915.777 kb on - strandat 915.864 kb on - strand, within Dshi_0897at 915.879 kb on + strand, within Dshi_0897at 915.930 kb on - strand, within Dshi_0897at 915.994 kb on - strand, within Dshi_0897at 916.020 kb on - strand, within Dshi_0897at 916.035 kb on - strand, within Dshi_0897at 916.140 kb on - strand, within Dshi_0897at 916.140 kb on - strand, within Dshi_0897at 916.170 kb on + strand, within Dshi_0897at 916.241 kb on + strand, within Dshi_0897at 916.302 kb on - strand, within Dshi_0897at 916.330 kb on - strand, within Dshi_0897at 916.335 kb on - strand, within Dshi_0897at 916.338 kb on + strand, within Dshi_0897at 916.410 kb on - strand, within Dshi_0897

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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913,235 + Dshi_0895 0.47 +0.1
913,246 + Dshi_0895 0.48 +0.0
913,379 + Dshi_0895 0.55 -0.8
913,400 - Dshi_0895 0.56 +0.7
913,494 + Dshi_0895 0.61 +1.0
913,543 - Dshi_0895 0.64 -1.8
913,566 + Dshi_0895 0.65 -0.0
913,587 - Dshi_0895 0.66 +0.7
913,647 + Dshi_0895 0.69 -0.1
913,708 - Dshi_0895 0.73 -0.0
913,884 + Dshi_0895 0.82 +0.8
913,902 + Dshi_0895 0.83 +0.8
913,957 + Dshi_0895 0.86 +1.2
913,983 - Dshi_0895 0.87 +0.1
913,986 + Dshi_0895 0.87 +0.8
914,032 + Dshi_0895 0.90 +2.1
914,050 - +0.9
914,255 - +0.6
914,300 + +0.4
914,300 + +0.4
914,367 + Dshi_0896 0.11 +1.6
914,526 - Dshi_0896 0.23 +0.9
914,563 + Dshi_0896 0.26 +0.2
914,580 + Dshi_0896 0.28 +0.2
914,580 + Dshi_0896 0.28 +2.6
914,646 - Dshi_0896 0.33 +0.3
914,799 + +0.4
914,799 + Dshi_0896 0.45 +0.8
914,916 + Dshi_0896 0.54 -0.9
914,916 + Dshi_0896 0.54 +1.0
915,162 + Dshi_0896 0.74 +1.5
915,170 - Dshi_0896 0.74 +0.1
915,362 - Dshi_0896 0.89 +1.4
915,429 - -1.5
915,448 + -0.2
915,479 - +1.7
915,498 - +0.1
915,662 - -0.0
915,675 + +1.4
915,683 - +0.6
915,769 + +2.4
915,777 - -1.6
915,777 - +1.1
915,864 - Dshi_0897 0.12 -0.2
915,879 + Dshi_0897 0.12 +0.8
915,930 - Dshi_0897 0.14 +1.5
915,994 - Dshi_0897 0.16 -0.6
916,020 - Dshi_0897 0.17 -0.3
916,035 - Dshi_0897 0.17 -0.4
916,140 - Dshi_0897 0.21 +0.4
916,140 - Dshi_0897 0.21 +0.8
916,170 + Dshi_0897 0.22 +0.5
916,241 + Dshi_0897 0.24 +0.8
916,302 - Dshi_0897 0.26 +1.0
916,330 - Dshi_0897 0.27 -0.1
916,335 - Dshi_0897 0.27 -0.4
916,338 + Dshi_0897 0.27 +0.5
916,410 - Dshi_0897 0.29 +0.6

Or see this region's nucleotide sequence