Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0658

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0657 and Dshi_0658 overlap by 4 nucleotidesDshi_0658 and Dshi_0659 are separated by 177 nucleotides Dshi_0657: Dshi_0657 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 659,994 to 661,172 _0657 Dshi_0658: Dshi_0658 - ABC transporter related (RefSeq), at 661,169 to 662,770 _0658 Dshi_0659: Dshi_0659 - oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 662,948 to 664,309 _0659 Position (kb) 661 662 663Strain fitness (log2 ratio) -2 -1 0 1at 660.316 kb on + strand, within Dshi_0657at 660.334 kb on + strand, within Dshi_0657at 660.342 kb on - strand, within Dshi_0657at 660.368 kb on + strand, within Dshi_0657at 660.416 kb on + strand, within Dshi_0657at 660.433 kb on - strand, within Dshi_0657at 660.633 kb on + strand, within Dshi_0657at 660.756 kb on - strand, within Dshi_0657at 660.772 kb on - strand, within Dshi_0657at 660.792 kb on + strand, within Dshi_0657at 660.792 kb on + strand, within Dshi_0657at 660.792 kb on + strand, within Dshi_0657at 660.810 kb on - strand, within Dshi_0657at 660.900 kb on + strand, within Dshi_0657at 661.235 kb on - strandat 661.254 kb on + strandat 661.254 kb on + strandat 661.368 kb on - strand, within Dshi_0658at 661.394 kb on - strand, within Dshi_0658at 661.521 kb on + strand, within Dshi_0658at 661.673 kb on - strand, within Dshi_0658at 661.811 kb on - strand, within Dshi_0658at 661.811 kb on - strand, within Dshi_0658at 661.853 kb on - strand, within Dshi_0658at 661.886 kb on + strand, within Dshi_0658at 661.991 kb on - strand, within Dshi_0658at 662.026 kb on + strand, within Dshi_0658at 662.103 kb on + strand, within Dshi_0658at 662.104 kb on - strand, within Dshi_0658at 662.172 kb on + strand, within Dshi_0658at 662.214 kb on - strand, within Dshi_0658at 662.261 kb on - strand, within Dshi_0658at 662.273 kb on + strand, within Dshi_0658at 662.311 kb on + strand, within Dshi_0658at 662.319 kb on - strand, within Dshi_0658at 662.348 kb on - strand, within Dshi_0658at 662.352 kb on + strand, within Dshi_0658at 662.509 kb on - strand, within Dshi_0658at 662.590 kb on + strand, within Dshi_0658at 662.590 kb on + strand, within Dshi_0658at 662.591 kb on + strand, within Dshi_0658at 662.613 kb on + strandat 662.613 kb on + strandat 662.613 kb on + strandat 662.614 kb on + strandat 662.637 kb on + strandat 662.845 kb on + strandat 663.037 kb on + strandat 663.099 kb on - strand, within Dshi_0659at 663.112 kb on - strand, within Dshi_0659at 663.116 kb on + strand, within Dshi_0659at 663.122 kb on - strand, within Dshi_0659at 663.246 kb on - strand, within Dshi_0659at 663.301 kb on + strand, within Dshi_0659at 663.311 kb on - strand, within Dshi_0659at 663.312 kb on + strand, within Dshi_0659at 663.375 kb on - strand, within Dshi_0659at 663.508 kb on + strand, within Dshi_0659at 663.516 kb on - strand, within Dshi_0659at 663.520 kb on + strand, within Dshi_0659at 663.530 kb on + strand, within Dshi_0659

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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660,316 + Dshi_0657 0.27 -0.1
660,334 + Dshi_0657 0.29 -0.6
660,342 - Dshi_0657 0.30 -0.1
660,368 + Dshi_0657 0.32 -0.2
660,416 + Dshi_0657 0.36 -0.1
660,433 - Dshi_0657 0.37 +0.2
660,633 + Dshi_0657 0.54 -0.3
660,756 - Dshi_0657 0.65 +0.8
660,772 - Dshi_0657 0.66 +0.1
660,792 + Dshi_0657 0.68 -0.4
660,792 + Dshi_0657 0.68 +0.1
660,792 + Dshi_0657 0.68 +1.2
660,810 - Dshi_0657 0.69 +0.4
660,900 + Dshi_0657 0.77 +1.1
661,235 - -1.3
661,254 + -0.6
661,254 + -0.8
661,368 - Dshi_0658 0.12 +0.2
661,394 - Dshi_0658 0.14 -2.3
661,521 + Dshi_0658 0.22 -0.9
661,673 - Dshi_0658 0.31 -0.1
661,811 - Dshi_0658 0.40 -0.1
661,811 - Dshi_0658 0.40 +1.3
661,853 - Dshi_0658 0.43 -0.3
661,886 + Dshi_0658 0.45 -0.6
661,991 - Dshi_0658 0.51 -0.7
662,026 + Dshi_0658 0.53 -0.7
662,103 + Dshi_0658 0.58 -1.1
662,104 - Dshi_0658 0.58 +0.7
662,172 + Dshi_0658 0.63 -0.1
662,214 - Dshi_0658 0.65 +0.5
662,261 - Dshi_0658 0.68 +0.2
662,273 + Dshi_0658 0.69 +0.4
662,311 + Dshi_0658 0.71 -0.1
662,319 - Dshi_0658 0.72 -1.4
662,348 - Dshi_0658 0.74 -0.9
662,352 + Dshi_0658 0.74 +0.2
662,509 - Dshi_0658 0.84 +1.5
662,590 + Dshi_0658 0.89 -1.1
662,590 + Dshi_0658 0.89 -1.3
662,591 + Dshi_0658 0.89 +1.1
662,613 + -0.6
662,613 + -0.9
662,613 + -0.6
662,614 + +0.1
662,637 + -0.6
662,845 + -0.3
663,037 + -0.5
663,099 - Dshi_0659 0.11 +1.1
663,112 - Dshi_0659 0.12 +0.8
663,116 + Dshi_0659 0.12 +1.3
663,122 - Dshi_0659 0.13 -0.1
663,246 - Dshi_0659 0.22 +1.5
663,301 + Dshi_0659 0.26 +0.9
663,311 - Dshi_0659 0.27 +0.8
663,312 + Dshi_0659 0.27 -0.4
663,375 - Dshi_0659 0.31 +0.5
663,508 + Dshi_0659 0.41 -0.3
663,516 - Dshi_0659 0.42 -0.1
663,520 + Dshi_0659 0.42 -0.3
663,530 + Dshi_0659 0.43 +0.5

Or see this region's nucleotide sequence