Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0421

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0419 and Dshi_0420 are separated by 139 nucleotidesDshi_0420 and Dshi_0421 are separated by 0 nucleotidesDshi_0421 and Dshi_0422 are separated by 184 nucleotidesDshi_0422 and Dshi_0423 are separated by 77 nucleotides Dshi_0419: Dshi_0419 - major facilitator superfamily MFS_1 (RefSeq), at 411,331 to 412,584 _0419 Dshi_0420: Dshi_0420 - Endonuclease/exonuclease/phosphatase (RefSeq), at 412,724 to 413,434 _0420 Dshi_0421: Dshi_0421 - phospholipase D/Transphosphatidylase (RefSeq), at 413,435 to 414,979 _0421 Dshi_0422: Dshi_0422 - Propeptide PepSY amd peptidase M4 (RefSeq), at 415,164 to 415,685 _0422 Dshi_0423: Dshi_0423 - phosphoesterase PA-phosphatase related (RefSeq), at 415,763 to 416,488 _0423 Position (kb) 413 414 415Strain fitness (log2 ratio) -2 -1 0 1 2at 412.536 kb on + strandat 412.548 kb on + strandat 412.556 kb on - strandat 412.556 kb on - strandat 412.572 kb on + strandat 412.579 kb on + strandat 412.602 kb on - strandat 412.683 kb on - strandat 412.703 kb on + strandat 412.772 kb on + strandat 412.916 kb on - strand, within Dshi_0420at 412.959 kb on + strand, within Dshi_0420at 412.959 kb on + strand, within Dshi_0420at 413.012 kb on + strand, within Dshi_0420at 413.056 kb on - strand, within Dshi_0420at 413.073 kb on + strand, within Dshi_0420at 413.088 kb on + strand, within Dshi_0420at 413.253 kb on + strand, within Dshi_0420at 413.261 kb on - strand, within Dshi_0420at 413.261 kb on - strand, within Dshi_0420at 413.266 kb on - strand, within Dshi_0420at 413.302 kb on + strand, within Dshi_0420at 413.406 kb on + strandat 413.406 kb on - strandat 413.406 kb on - strandat 413.512 kb on - strandat 413.526 kb on + strandat 413.526 kb on + strandat 413.541 kb on + strandat 413.613 kb on + strand, within Dshi_0421at 413.656 kb on + strand, within Dshi_0421at 413.713 kb on + strand, within Dshi_0421at 413.721 kb on - strand, within Dshi_0421at 413.782 kb on - strand, within Dshi_0421at 413.791 kb on + strand, within Dshi_0421at 413.881 kb on + strand, within Dshi_0421at 413.894 kb on - strand, within Dshi_0421at 413.907 kb on - strand, within Dshi_0421at 413.917 kb on + strand, within Dshi_0421at 413.959 kb on + strand, within Dshi_0421at 414.004 kb on + strand, within Dshi_0421at 414.012 kb on - strand, within Dshi_0421at 414.018 kb on - strand, within Dshi_0421at 414.056 kb on + strand, within Dshi_0421at 414.064 kb on + strand, within Dshi_0421at 414.076 kb on + strand, within Dshi_0421at 414.084 kb on - strand, within Dshi_0421at 414.170 kb on + strand, within Dshi_0421at 414.201 kb on - strand, within Dshi_0421at 414.210 kb on - strand, within Dshi_0421at 414.231 kb on + strand, within Dshi_0421at 414.248 kb on + strand, within Dshi_0421at 414.271 kb on + strand, within Dshi_0421at 414.282 kb on + strand, within Dshi_0421at 414.292 kb on + strand, within Dshi_0421at 414.295 kb on - strand, within Dshi_0421at 414.311 kb on - strand, within Dshi_0421at 414.335 kb on + strand, within Dshi_0421at 414.343 kb on - strand, within Dshi_0421at 414.343 kb on - strand, within Dshi_0421at 414.387 kb on + strand, within Dshi_0421at 414.424 kb on + strand, within Dshi_0421at 414.429 kb on + strand, within Dshi_0421at 414.535 kb on + strand, within Dshi_0421at 414.566 kb on + strand, within Dshi_0421at 414.568 kb on + strand, within Dshi_0421at 414.570 kb on + strand, within Dshi_0421at 414.577 kb on - strand, within Dshi_0421at 414.582 kb on + strand, within Dshi_0421at 414.590 kb on - strand, within Dshi_0421at 414.590 kb on - strand, within Dshi_0421at 414.644 kb on - strand, within Dshi_0421at 414.674 kb on + strand, within Dshi_0421at 414.674 kb on + strand, within Dshi_0421at 414.679 kb on + strand, within Dshi_0421at 414.681 kb on + strand, within Dshi_0421at 414.682 kb on - strand, within Dshi_0421at 414.682 kb on - strand, within Dshi_0421at 414.682 kb on - strand, within Dshi_0421at 414.682 kb on - strand, within Dshi_0421at 414.745 kb on + strand, within Dshi_0421at 414.748 kb on - strand, within Dshi_0421at 414.766 kb on + strand, within Dshi_0421at 414.799 kb on + strand, within Dshi_0421at 414.802 kb on - strand, within Dshi_0421at 414.813 kb on + strand, within Dshi_0421at 414.925 kb on - strandat 414.930 kb on - strandat 414.951 kb on + strandat 414.988 kb on + strandat 414.996 kb on - strandat 415.015 kb on - strandat 415.030 kb on - strandat 415.045 kb on + strandat 415.055 kb on + strandat 415.063 kb on - strandat 415.135 kb on + strandat 415.140 kb on + strandat 415.238 kb on - strand, within Dshi_0422at 415.298 kb on + strand, within Dshi_0422at 415.340 kb on - strand, within Dshi_0422at 415.346 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.418 kb on + strand, within Dshi_0422at 415.433 kb on - strand, within Dshi_0422at 415.439 kb on - strand, within Dshi_0422at 415.448 kb on + strand, within Dshi_0422at 415.453 kb on + strand, within Dshi_0422at 415.504 kb on + strand, within Dshi_0422at 415.516 kb on - strand, within Dshi_0422at 415.519 kb on + strand, within Dshi_0422at 415.538 kb on - strand, within Dshi_0422at 415.592 kb on + strand, within Dshi_0422at 415.646 kb on + strandat 415.747 kb on - strandat 415.759 kb on + strandat 415.759 kb on + strandat 415.759 kb on + strandat 415.759 kb on + strandat 415.767 kb on - strandat 415.767 kb on - strandat 415.775 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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412,536 + -1.6
412,548 + +0.2
412,556 - -0.2
412,556 - +0.2
412,572 + +0.4
412,579 + +1.7
412,602 - +0.4
412,683 - +0.6
412,703 + +0.3
412,772 + -0.5
412,916 - Dshi_0420 0.27 +0.3
412,959 + Dshi_0420 0.33 +0.1
412,959 + Dshi_0420 0.33 -0.3
413,012 + Dshi_0420 0.41 +0.1
413,056 - Dshi_0420 0.47 -0.4
413,073 + Dshi_0420 0.49 -1.2
413,088 + Dshi_0420 0.51 -1.0
413,253 + Dshi_0420 0.74 -0.3
413,261 - Dshi_0420 0.76 -0.7
413,261 - Dshi_0420 0.76 -0.9
413,266 - Dshi_0420 0.76 -0.5
413,302 + Dshi_0420 0.81 -0.7
413,406 + -0.3
413,406 - -0.3
413,406 - +0.2
413,512 - -0.1
413,526 + +0.8
413,526 + +0.2
413,541 + -1.0
413,613 + Dshi_0421 0.12 -0.5
413,656 + Dshi_0421 0.14 -0.0
413,713 + Dshi_0421 0.18 -0.5
413,721 - Dshi_0421 0.19 +0.1
413,782 - Dshi_0421 0.22 +1.1
413,791 + Dshi_0421 0.23 -0.1
413,881 + Dshi_0421 0.29 -0.2
413,894 - Dshi_0421 0.30 -0.0
413,907 - Dshi_0421 0.31 -0.1
413,917 + Dshi_0421 0.31 -0.0
413,959 + Dshi_0421 0.34 -1.4
414,004 + Dshi_0421 0.37 -0.0
414,012 - Dshi_0421 0.37 +0.2
414,018 - Dshi_0421 0.38 -0.1
414,056 + Dshi_0421 0.40 +1.8
414,064 + Dshi_0421 0.41 +0.2
414,076 + Dshi_0421 0.41 -0.1
414,084 - Dshi_0421 0.42 -0.7
414,170 + Dshi_0421 0.48 +0.1
414,201 - Dshi_0421 0.50 +0.3
414,210 - Dshi_0421 0.50 +0.4
414,231 + Dshi_0421 0.52 -0.2
414,248 + Dshi_0421 0.53 -0.7
414,271 + Dshi_0421 0.54 -0.3
414,282 + Dshi_0421 0.55 -1.0
414,292 + Dshi_0421 0.55 +0.1
414,295 - Dshi_0421 0.56 +0.7
414,311 - Dshi_0421 0.57 -1.5
414,335 + Dshi_0421 0.58 -0.4
414,343 - Dshi_0421 0.59 -0.0
414,343 - Dshi_0421 0.59 +0.2
414,387 + Dshi_0421 0.62 -0.1
414,424 + Dshi_0421 0.64 -1.2
414,429 + Dshi_0421 0.64 -0.7
414,535 + Dshi_0421 0.71 -0.2
414,566 + Dshi_0421 0.73 +0.9
414,568 + Dshi_0421 0.73 -0.4
414,570 + Dshi_0421 0.73 +1.2
414,577 - Dshi_0421 0.74 -0.4
414,582 + Dshi_0421 0.74 -0.2
414,590 - Dshi_0421 0.75 +0.6
414,590 - Dshi_0421 0.75 +0.1
414,644 - Dshi_0421 0.78 -0.1
414,674 + Dshi_0421 0.80 +0.2
414,674 + Dshi_0421 0.80 +0.7
414,679 + Dshi_0421 0.81 -0.3
414,681 + Dshi_0421 0.81 -0.8
414,682 - Dshi_0421 0.81 -1.0
414,682 - Dshi_0421 0.81 -0.6
414,682 - Dshi_0421 0.81 -0.3
414,682 - Dshi_0421 0.81 -2.2
414,745 + Dshi_0421 0.85 +0.3
414,748 - Dshi_0421 0.85 -0.1
414,766 + Dshi_0421 0.86 +1.6
414,799 + Dshi_0421 0.88 -0.1
414,802 - Dshi_0421 0.88 +1.0
414,813 + Dshi_0421 0.89 +0.4
414,925 - -0.2
414,930 - +1.7
414,951 + -0.0
414,988 + +1.0
414,996 - +0.2
415,015 - -0.0
415,030 - +0.3
415,045 + +1.0
415,055 + -0.6
415,063 - -1.3
415,135 + -1.0
415,140 + -0.4
415,238 - Dshi_0422 0.14 +0.4
415,298 + Dshi_0422 0.26 -1.2
415,340 - Dshi_0422 0.34 -0.3
415,346 + Dshi_0422 0.35 +0.1
415,408 + Dshi_0422 0.47 -0.5
415,408 + Dshi_0422 0.47 +0.0
415,408 + Dshi_0422 0.47 +0.4
415,408 + Dshi_0422 0.47 -0.1
415,408 + Dshi_0422 0.47 -0.8
415,408 + Dshi_0422 0.47 -0.4
415,416 - Dshi_0422 0.48 +1.4
415,416 - Dshi_0422 0.48 -0.4
415,416 - Dshi_0422 0.48 +0.4
415,416 - Dshi_0422 0.48 +0.8
415,416 - Dshi_0422 0.48 +1.7
415,418 + Dshi_0422 0.49 +0.3
415,433 - Dshi_0422 0.52 -0.1
415,439 - Dshi_0422 0.53 +1.6
415,448 + Dshi_0422 0.54 +2.2
415,453 + Dshi_0422 0.55 -0.0
415,504 + Dshi_0422 0.65 +1.3
415,516 - Dshi_0422 0.67 +1.0
415,519 + Dshi_0422 0.68 +0.5
415,538 - Dshi_0422 0.72 -0.3
415,592 + Dshi_0422 0.82 +0.7
415,646 + +0.0
415,747 - -0.1
415,759 + +0.9
415,759 + +0.3
415,759 + +1.2
415,759 + -0.0
415,767 - +0.1
415,767 - +0.2
415,775 - +0.4

Or see this region's nucleotide sequence