Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0417

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0415 and Dshi_0416 are separated by 345 nucleotidesDshi_0416 and Dshi_0417 are separated by 83 nucleotidesDshi_0417 and Dshi_0418 are separated by 74 nucleotides Dshi_0415: Dshi_0415 - hypothetical protein (RefSeq), at 409,020 to 409,262 _0415 Dshi_0416: Dshi_0416 - protein of unknown function DUF1127 (RefSeq), at 409,608 to 409,919 _0416 Dshi_0417: Dshi_0417 - hypothetical protein (RefSeq), at 410,003 to 410,209 _0417 Dshi_0418: Dshi_0418 - UspA domain protein (RefSeq), at 410,284 to 411,177 _0418 Position (kb) 410 411Strain fitness (log2 ratio) -2 -1 0 1at 409.015 kb on + strandat 409.025 kb on - strandat 409.073 kb on - strand, within Dshi_0415at 409.074 kb on - strand, within Dshi_0415at 409.107 kb on - strand, within Dshi_0415at 409.135 kb on + strand, within Dshi_0415at 409.143 kb on - strand, within Dshi_0415at 409.155 kb on + strand, within Dshi_0415at 409.210 kb on + strand, within Dshi_0415at 409.218 kb on - strand, within Dshi_0415at 409.220 kb on + strand, within Dshi_0415at 409.228 kb on - strand, within Dshi_0415at 409.232 kb on + strandat 409.232 kb on + strand, within Dshi_0415at 409.235 kb on - strand, within Dshi_0415at 409.240 kb on - strandat 409.242 kb on + strandat 409.249 kb on - strandat 409.264 kb on - strandat 409.264 kb on - strandat 409.277 kb on - strandat 409.291 kb on - strandat 409.291 kb on - strandat 409.291 kb on - strandat 409.298 kb on - strandat 409.298 kb on - strandat 409.298 kb on - strandat 409.326 kb on + strandat 409.350 kb on + strandat 409.396 kb on + strandat 409.399 kb on + strandat 409.407 kb on + strandat 409.429 kb on + strandat 409.429 kb on + strandat 409.429 kb on + strandat 409.437 kb on - strandat 409.448 kb on - strandat 409.448 kb on - strandat 409.449 kb on + strandat 409.511 kb on + strandat 409.531 kb on - strandat 409.566 kb on + strandat 409.572 kb on - strandat 409.587 kb on - strandat 409.587 kb on - strandat 409.597 kb on - strandat 409.600 kb on - strandat 409.624 kb on - strandat 409.676 kb on - strand, within Dshi_0416at 409.680 kb on + strand, within Dshi_0416at 409.688 kb on - strand, within Dshi_0416at 409.688 kb on - strand, within Dshi_0416at 409.901 kb on - strandat 409.928 kb on - strandat 409.973 kb on + strandat 409.991 kb on - strandat 409.996 kb on - strandat 410.006 kb on - strandat 410.042 kb on + strand, within Dshi_0417at 410.044 kb on - strand, within Dshi_0417at 410.055 kb on - strand, within Dshi_0417at 410.067 kb on - strand, within Dshi_0417at 410.103 kb on - strand, within Dshi_0417at 410.109 kb on - strand, within Dshi_0417at 410.169 kb on - strand, within Dshi_0417at 410.326 kb on - strandat 410.328 kb on + strandat 410.336 kb on - strandat 410.461 kb on + strand, within Dshi_0418at 410.501 kb on + strand, within Dshi_0418at 410.509 kb on - strand, within Dshi_0418at 410.551 kb on - strand, within Dshi_0418at 410.648 kb on + strand, within Dshi_0418at 410.649 kb on + strand, within Dshi_0418at 410.708 kb on - strand, within Dshi_0418at 410.776 kb on + strand, within Dshi_0418at 410.791 kb on - strand, within Dshi_0418at 410.827 kb on + strand, within Dshi_0418at 410.835 kb on - strand, within Dshi_0418at 410.879 kb on + strand, within Dshi_0418at 411.024 kb on - strand, within Dshi_0418at 411.106 kb on + strandat 411.130 kb on + strandat 411.189 kb on + strandat 411.189 kb on + strandat 411.197 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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409,015 + -0.0
409,025 - -0.5
409,073 - Dshi_0415 0.22 +0.0
409,074 - Dshi_0415 0.22 +1.6
409,107 - Dshi_0415 0.36 -0.0
409,135 + Dshi_0415 0.47 +0.5
409,143 - Dshi_0415 0.51 -0.4
409,155 + Dshi_0415 0.56 -1.0
409,210 + Dshi_0415 0.78 +0.6
409,218 - Dshi_0415 0.81 -0.2
409,220 + Dshi_0415 0.82 -1.0
409,228 - Dshi_0415 0.86 +0.5
409,232 + -1.6
409,232 + Dshi_0415 0.87 -0.3
409,235 - Dshi_0415 0.88 +0.1
409,240 - -0.1
409,242 + +0.7
409,249 - +0.7
409,264 - +0.7
409,264 - -0.0
409,277 - +1.2
409,291 - +0.4
409,291 - -0.4
409,291 - +0.4
409,298 - -0.4
409,298 - -1.0
409,298 - -0.5
409,326 + -1.8
409,350 + +0.2
409,396 + +1.3
409,399 + +0.1
409,407 + +1.6
409,429 + +0.1
409,429 + -0.4
409,429 + +1.0
409,437 - +0.7
409,448 - -1.3
409,448 - -0.0
409,449 + -0.3
409,511 + -1.0
409,531 - +1.6
409,566 + -0.3
409,572 - -0.3
409,587 - +0.1
409,587 - -1.6
409,597 - +0.3
409,600 - +0.2
409,624 - +1.2
409,676 - Dshi_0416 0.22 +1.3
409,680 + Dshi_0416 0.23 -0.6
409,688 - Dshi_0416 0.26 +0.3
409,688 - Dshi_0416 0.26 -0.4
409,901 - +0.1
409,928 - -1.0
409,973 + +1.3
409,991 - -0.0
409,996 - -0.7
410,006 - -0.8
410,042 + Dshi_0417 0.19 -0.8
410,044 - Dshi_0417 0.20 -1.3
410,055 - Dshi_0417 0.25 -0.2
410,067 - Dshi_0417 0.31 +0.6
410,103 - Dshi_0417 0.48 +0.8
410,109 - Dshi_0417 0.51 +0.1
410,169 - Dshi_0417 0.80 -1.4
410,326 - +0.2
410,328 + -0.8
410,336 - +0.3
410,461 + Dshi_0418 0.20 +1.0
410,501 + Dshi_0418 0.24 +0.1
410,509 - Dshi_0418 0.25 -0.4
410,551 - Dshi_0418 0.30 -0.3
410,648 + Dshi_0418 0.41 +0.7
410,649 + Dshi_0418 0.41 -0.8
410,708 - Dshi_0418 0.47 -0.2
410,776 + Dshi_0418 0.55 -0.7
410,791 - Dshi_0418 0.57 -0.1
410,827 + Dshi_0418 0.61 -0.3
410,835 - Dshi_0418 0.62 -0.3
410,879 + Dshi_0418 0.67 +0.3
411,024 - Dshi_0418 0.83 +0.7
411,106 + -0.1
411,130 + +0.3
411,189 + -1.6
411,189 + -1.2
411,197 + -0.4

Or see this region's nucleotide sequence