Experiment: Growth at pH7 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS20040 and PFLU_RS20045 are separated by 279 nucleotides PFLU_RS20045 and PFLU_RS20050 are separated by 57 nucleotides
PFLU_RS20040: PFLU_RS20040 - GntR family transcriptional regulator, at 4,535,231 to 4,535,899
_RS20040
PFLU_RS20045: PFLU_RS20045 - hypothetical protein, at 4,536,179 to 4,536,619
_RS20045
PFLU_RS20050: PFLU_RS20050 - HAMP domain-containing protein, at 4,536,677 to 4,537,960
_RS20050
Position (kb) 4536
4537 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4535.233 kb on - strand at 4535.233 kb on - strand at 4535.272 kb on + strand at 4535.272 kb on + strand at 4535.421 kb on + strand, within PFLU_RS20040 at 4535.422 kb on - strand, within PFLU_RS20040 at 4535.422 kb on - strand, within PFLU_RS20040 at 4535.475 kb on + strand, within PFLU_RS20040 at 4535.475 kb on + strand, within PFLU_RS20040 at 4535.475 kb on + strand, within PFLU_RS20040 at 4535.476 kb on - strand, within PFLU_RS20040 at 4535.815 kb on + strand, within PFLU_RS20040 at 4535.816 kb on - strand, within PFLU_RS20040 at 4535.841 kb on + strand at 4535.842 kb on - strand at 4535.842 kb on - strand at 4535.842 kb on - strand at 4535.880 kb on + strand at 4535.880 kb on + strand at 4535.880 kb on + strand at 4535.880 kb on + strand at 4535.881 kb on - strand at 4535.881 kb on - strand at 4535.957 kb on - strand at 4535.996 kb on + strand at 4536.044 kb on + strand at 4536.045 kb on - strand at 4536.095 kb on + strand at 4536.095 kb on + strand at 4536.096 kb on - strand at 4536.096 kb on - strand at 4536.125 kb on - strand at 4536.198 kb on + strand at 4536.198 kb on + strand at 4536.198 kb on + strand at 4536.199 kb on - strand at 4536.199 kb on - strand at 4536.199 kb on - strand at 4536.246 kb on + strand, within PFLU_RS20045 at 4536.246 kb on + strand, within PFLU_RS20045 at 4536.247 kb on - strand, within PFLU_RS20045 at 4536.247 kb on - strand, within PFLU_RS20045 at 4536.247 kb on - strand, within PFLU_RS20045 at 4536.247 kb on - strand, within PFLU_RS20045 at 4536.276 kb on + strand, within PFLU_RS20045 at 4536.277 kb on - strand, within PFLU_RS20045 at 4536.653 kb on - strand at 4536.667 kb on + strand at 4536.667 kb on + strand at 4536.667 kb on + strand at 4536.667 kb on + strand at 4536.667 kb on + strand at 4536.667 kb on + strand at 4536.668 kb on - strand at 4536.668 kb on - strand at 4536.668 kb on - strand at 4536.668 kb on - strand at 4536.668 kb on - strand at 4536.688 kb on + strand at 4536.688 kb on + strand at 4536.688 kb on + strand at 4536.688 kb on + strand at 4536.688 kb on + strand at 4536.688 kb on + strand at 4536.688 kb on + strand at 4536.688 kb on + strand at 4536.688 kb on + strand at 4536.689 kb on - strand at 4536.689 kb on - strand at 4536.689 kb on - strand at 4536.699 kb on - strand at 4536.920 kb on + strand, within PFLU_RS20050 at 4536.920 kb on + strand, within PFLU_RS20050 at 4536.928 kb on + strand, within PFLU_RS20050 at 4536.928 kb on + strand, within PFLU_RS20050 at 4536.929 kb on - strand, within PFLU_RS20050 at 4536.929 kb on - strand, within PFLU_RS20050 at 4536.979 kb on + strand, within PFLU_RS20050 at 4536.981 kb on + strand, within PFLU_RS20050 at 4536.981 kb on + strand, within PFLU_RS20050 at 4536.981 kb on + strand, within PFLU_RS20050 at 4536.981 kb on + strand, within PFLU_RS20050 at 4536.981 kb on + strand, within PFLU_RS20050 at 4536.982 kb on - strand, within PFLU_RS20050 at 4536.982 kb on - strand, within PFLU_RS20050 at 4537.021 kb on - strand, within PFLU_RS20050 at 4537.141 kb on + strand, within PFLU_RS20050 at 4537.524 kb on + strand, within PFLU_RS20050 at 4537.524 kb on + strand, within PFLU_RS20050 at 4537.524 kb on + strand, within PFLU_RS20050 at 4537.524 kb on + strand, within PFLU_RS20050 at 4537.525 kb on - strand, within PFLU_RS20050 at 4537.525 kb on - strand, within PFLU_RS20050 at 4537.528 kb on - strand, within PFLU_RS20050 at 4537.537 kb on - strand, within PFLU_RS20050 at 4537.537 kb on - strand, within PFLU_RS20050 at 4537.537 kb on - strand, within PFLU_RS20050
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose remove 4,535,233 - +0.8 4,535,233 - -2.0 4,535,272 + -0.6 4,535,272 + -0.8 4,535,421 + PFLU_RS20040 0.28 +2.3 4,535,422 - PFLU_RS20040 0.29 -2.2 4,535,422 - PFLU_RS20040 0.29 -0.7 4,535,475 + PFLU_RS20040 0.36 +1.0 4,535,475 + PFLU_RS20040 0.36 +0.5 4,535,475 + PFLU_RS20040 0.36 +1.6 4,535,476 - PFLU_RS20040 0.37 -0.0 4,535,815 + PFLU_RS20040 0.87 +2.9 4,535,816 - PFLU_RS20040 0.87 +1.1 4,535,841 + +2.9 4,535,842 - +1.9 4,535,842 - +0.8 4,535,842 - -0.6 4,535,880 + +2.4 4,535,880 + -0.1 4,535,880 + -0.7 4,535,880 + -1.9 4,535,881 - -1.8 4,535,881 - -0.6 4,535,957 - -0.4 4,535,996 + -0.8 4,536,044 + -1.5 4,536,045 - -2.6 4,536,095 + -2.2 4,536,095 + -0.2 4,536,096 - +1.0 4,536,096 - -0.9 4,536,125 - -1.4 4,536,198 + +1.4 4,536,198 + +0.3 4,536,198 + +1.3 4,536,199 - -1.5 4,536,199 - +0.8 4,536,199 - -2.5 4,536,246 + PFLU_RS20045 0.15 +0.2 4,536,246 + PFLU_RS20045 0.15 -1.7 4,536,247 - PFLU_RS20045 0.15 -0.6 4,536,247 - PFLU_RS20045 0.15 +1.8 4,536,247 - PFLU_RS20045 0.15 -0.1 4,536,247 - PFLU_RS20045 0.15 -1.7 4,536,276 + PFLU_RS20045 0.22 -0.8 4,536,277 - PFLU_RS20045 0.22 +0.0 4,536,653 - +0.2 4,536,667 + -1.6 4,536,667 + -0.2 4,536,667 + -2.1 4,536,667 + -0.4 4,536,667 + -0.8 4,536,667 + -2.6 4,536,668 - -1.1 4,536,668 - -2.0 4,536,668 - +1.8 4,536,668 - -0.5 4,536,668 - -1.2 4,536,688 + -0.4 4,536,688 + -1.2 4,536,688 + -2.3 4,536,688 + +1.1 4,536,688 + +1.0 4,536,688 + +1.5 4,536,688 + +1.8 4,536,688 + +1.3 4,536,688 + -0.1 4,536,689 - +2.0 4,536,689 - +0.9 4,536,689 - +1.0 4,536,699 - +1.2 4,536,920 + PFLU_RS20050 0.19 +1.4 4,536,920 + PFLU_RS20050 0.19 -1.3 4,536,928 + PFLU_RS20050 0.20 +1.7 4,536,928 + PFLU_RS20050 0.20 -0.1 4,536,929 - PFLU_RS20050 0.20 +1.4 4,536,929 - PFLU_RS20050 0.20 -0.2 4,536,979 + PFLU_RS20050 0.24 -0.4 4,536,981 + PFLU_RS20050 0.24 +1.0 4,536,981 + PFLU_RS20050 0.24 +0.2 4,536,981 + PFLU_RS20050 0.24 -0.6 4,536,981 + PFLU_RS20050 0.24 -2.4 4,536,981 + PFLU_RS20050 0.24 -1.9 4,536,982 - PFLU_RS20050 0.24 -3.8 4,536,982 - PFLU_RS20050 0.24 +1.6 4,537,021 - PFLU_RS20050 0.27 +1.3 4,537,141 + PFLU_RS20050 0.36 -1.2 4,537,524 + PFLU_RS20050 0.66 +0.9 4,537,524 + PFLU_RS20050 0.66 -1.4 4,537,524 + PFLU_RS20050 0.66 +2.4 4,537,524 + PFLU_RS20050 0.66 -2.1 4,537,525 - PFLU_RS20050 0.66 -3.1 4,537,525 - PFLU_RS20050 0.66 +1.3 4,537,528 - PFLU_RS20050 0.66 +1.3 4,537,537 - PFLU_RS20050 0.67 -0.3 4,537,537 - PFLU_RS20050 0.67 +1.3 4,537,537 - PFLU_RS20050 0.67 +1.0
Or see this region's nucleotide sequence