Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18315

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18310 and BPHYT_RS18315 are separated by 313 nucleotidesBPHYT_RS18315 and BPHYT_RS18320 are separated by 363 nucleotides BPHYT_RS18310: BPHYT_RS18310 - malic enzyme, at 4,118,059 to 4,120,341 _RS18310 BPHYT_RS18315: BPHYT_RS18315 - MFS transporter, at 4,120,655 to 4,121,887 _RS18315 BPHYT_RS18320: BPHYT_RS18320 - orotate phosphoribosyltransferase, at 4,122,251 to 4,122,937 _RS18320 Position (kb) 4120 4121 4122Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 4119.665 kb on + strand, within BPHYT_RS18310at 4119.666 kb on - strandat 4119.909 kb on - strand, within BPHYT_RS18310at 4120.163 kb on + strandat 4120.163 kb on + strandat 4120.200 kb on + strandat 4120.200 kb on + strandat 4120.307 kb on + strandat 4120.407 kb on - strandat 4120.407 kb on - strandat 4120.515 kb on + strandat 4120.516 kb on - strandat 4120.516 kb on - strandat 4120.516 kb on - strandat 4120.719 kb on + strandat 4120.720 kb on - strandat 4120.965 kb on + strand, within BPHYT_RS18315at 4120.998 kb on + strand, within BPHYT_RS18315at 4120.999 kb on - strand, within BPHYT_RS18315at 4121.094 kb on - strand, within BPHYT_RS18315at 4121.094 kb on - strand, within BPHYT_RS18315at 4121.136 kb on + strand, within BPHYT_RS18315at 4121.136 kb on + strand, within BPHYT_RS18315at 4121.136 kb on + strand, within BPHYT_RS18315at 4121.136 kb on + strand, within BPHYT_RS18315at 4121.137 kb on - strand, within BPHYT_RS18315at 4121.137 kb on - strand, within BPHYT_RS18315at 4121.163 kb on + strand, within BPHYT_RS18315at 4121.163 kb on + strand, within BPHYT_RS18315at 4121.164 kb on - strand, within BPHYT_RS18315at 4121.164 kb on - strand, within BPHYT_RS18315at 4121.442 kb on + strand, within BPHYT_RS18315at 4121.443 kb on - strand, within BPHYT_RS18315at 4121.443 kb on - strand, within BPHYT_RS18315at 4121.563 kb on - strand, within BPHYT_RS18315at 4121.644 kb on - strand, within BPHYT_RS18315at 4121.644 kb on - strand, within BPHYT_RS18315at 4121.644 kb on - strand, within BPHYT_RS18315at 4121.836 kb on - strandat 4121.901 kb on + strandat 4121.953 kb on + strandat 4121.954 kb on - strandat 4122.044 kb on + strandat 4122.045 kb on - strandat 4122.045 kb on - strandat 4122.185 kb on + strandat 4122.376 kb on + strand, within BPHYT_RS18320at 4122.377 kb on - strand, within BPHYT_RS18320at 4122.465 kb on - strand, within BPHYT_RS18320at 4122.554 kb on + strand, within BPHYT_RS18320at 4122.554 kb on + strand, within BPHYT_RS18320at 4122.555 kb on - strand, within BPHYT_RS18320at 4122.555 kb on - strand, within BPHYT_RS18320at 4122.734 kb on + strand, within BPHYT_RS18320at 4122.734 kb on + strand, within BPHYT_RS18320at 4122.835 kb on + strand, within BPHYT_RS18320at 4122.835 kb on + strand, within BPHYT_RS18320at 4122.836 kb on - strand, within BPHYT_RS18320at 4122.836 kb on - strand, within BPHYT_RS18320at 4122.839 kb on + strand, within BPHYT_RS18320

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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4,119,665 + BPHYT_RS18310 0.70 +0.1
4,119,666 - +2.6
4,119,909 - BPHYT_RS18310 0.81 +0.2
4,120,163 + +1.0
4,120,163 + +0.1
4,120,200 + -0.4
4,120,200 + -0.1
4,120,307 + -0.1
4,120,407 - -0.2
4,120,407 - -0.1
4,120,515 + -2.0
4,120,516 - +0.3
4,120,516 - +0.0
4,120,516 - +0.1
4,120,719 + +0.1
4,120,720 - -0.1
4,120,965 + BPHYT_RS18315 0.25 -0.8
4,120,998 + BPHYT_RS18315 0.28 +0.0
4,120,999 - BPHYT_RS18315 0.28 -0.0
4,121,094 - BPHYT_RS18315 0.36 -0.4
4,121,094 - BPHYT_RS18315 0.36 -0.5
4,121,136 + BPHYT_RS18315 0.39 +0.7
4,121,136 + BPHYT_RS18315 0.39 -0.3
4,121,136 + BPHYT_RS18315 0.39 -0.1
4,121,136 + BPHYT_RS18315 0.39 +0.9
4,121,137 - BPHYT_RS18315 0.39 +0.2
4,121,137 - BPHYT_RS18315 0.39 -0.2
4,121,163 + BPHYT_RS18315 0.41 -0.8
4,121,163 + BPHYT_RS18315 0.41 +1.0
4,121,164 - BPHYT_RS18315 0.41 -0.5
4,121,164 - BPHYT_RS18315 0.41 +0.5
4,121,442 + BPHYT_RS18315 0.64 -1.0
4,121,443 - BPHYT_RS18315 0.64 -0.8
4,121,443 - BPHYT_RS18315 0.64 +0.1
4,121,563 - BPHYT_RS18315 0.74 -0.3
4,121,644 - BPHYT_RS18315 0.80 -0.0
4,121,644 - BPHYT_RS18315 0.80 +0.6
4,121,644 - BPHYT_RS18315 0.80 -0.1
4,121,836 - -0.8
4,121,901 + +0.2
4,121,953 + -0.2
4,121,954 - +0.7
4,122,044 + +2.0
4,122,045 - +0.1
4,122,045 - -1.1
4,122,185 + +0.4
4,122,376 + BPHYT_RS18320 0.18 -2.0
4,122,377 - BPHYT_RS18320 0.18 -4.5
4,122,465 - BPHYT_RS18320 0.31 -5.1
4,122,554 + BPHYT_RS18320 0.44 -5.9
4,122,554 + BPHYT_RS18320 0.44 -5.9
4,122,555 - BPHYT_RS18320 0.44 -6.5
4,122,555 - BPHYT_RS18320 0.44 -5.9
4,122,734 + BPHYT_RS18320 0.70 -3.9
4,122,734 + BPHYT_RS18320 0.70 -5.8
4,122,835 + BPHYT_RS18320 0.85 +0.0
4,122,835 + BPHYT_RS18320 0.85 -7.1
4,122,836 - BPHYT_RS18320 0.85 -5.3
4,122,836 - BPHYT_RS18320 0.85 -3.1
4,122,839 + BPHYT_RS18320 0.86 -3.2

Or see this region's nucleotide sequence