Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3177 and DvMF_3178 are separated by 103 nucleotides DvMF_3178 and DvMF_3179 are separated by 293 nucleotides DvMF_3179 and DvMF_3180 are separated by 168 nucleotides
DvMF_3177: DvMF_3177 - protein of unknown function UPF0029 (RefSeq), at 4,008,335 to 4,009,159
_3177
DvMF_3178: DvMF_3178 - 6-phosphogluconolactonase (RefSeq), at 4,009,263 to 4,010,000
_3178
DvMF_3179: DvMF_3179 - OsmC family protein (RefSeq), at 4,010,294 to 4,010,773
_3179
DvMF_3180: DvMF_3180 - beta-lactamase domain protein (RefSeq), at 4,010,942 to 4,011,688
_3180
Position (kb)
4009
4010
4011 Strain fitness (log2 ratio)
-1
0
1 at 4008.278 kb on + strand at 4008.440 kb on + strand, within DvMF_3177 at 4009.129 kb on + strand at 4009.229 kb on + strand at 4009.298 kb on + strand at 4009.751 kb on + strand, within DvMF_3178 at 4009.766 kb on + strand, within DvMF_3178 at 4009.769 kb on - strand, within DvMF_3178 at 4009.824 kb on + strand, within DvMF_3178 at 4009.868 kb on + strand, within DvMF_3178 at 4010.056 kb on + strand at 4010.168 kb on + strand at 4010.338 kb on - strand at 4010.413 kb on + strand, within DvMF_3179 at 4010.550 kb on + strand, within DvMF_3179 at 4010.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 4,008,278 + -0.3 4,008,440 + DvMF_3177 0.13 -0.4 4,009,129 + -1.5 4,009,229 + +0.5 4,009,298 + -1.0 4,009,751 + DvMF_3178 0.66 -0.4 4,009,766 + DvMF_3178 0.68 -1.7 4,009,769 - DvMF_3178 0.69 -0.3 4,009,824 + DvMF_3178 0.76 -1.0 4,009,868 + DvMF_3178 0.82 -0.0 4,010,056 + -0.3 4,010,168 + -0.6 4,010,338 - -0.9 4,010,413 + DvMF_3179 0.25 -1.0 4,010,550 + DvMF_3179 0.53 +0.3 4,010,911 - +0.5
Or see this region's nucleotide sequence