Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3056 and DvMF_3057 are separated by 292 nucleotides DvMF_3057 and DvMF_3058 are separated by 238 nucleotides
DvMF_3056: DvMF_3056 - aminoglycoside phosphotransferase (RefSeq), at 3,857,273 to 3,858,325
_3056
DvMF_3057: DvMF_3057 - DEAD/DEAH box helicase domain protein (RefSeq), at 3,858,618 to 3,860,351
_3057
DvMF_3058: DvMF_3058 - putative nucleotide-binding protein (RefSeq), at 3,860,590 to 3,861,081
_3058
Position (kb)
3858
3859
3860
3861 Strain fitness (log2 ratio)
-2
-1
0
1 at 3857.698 kb on + strand, within DvMF_3056 at 3857.876 kb on + strand, within DvMF_3056 at 3858.103 kb on + strand, within DvMF_3056 at 3858.223 kb on + strand at 3858.352 kb on - strand at 3858.444 kb on - strand at 3858.478 kb on + strand at 3858.694 kb on - strand at 3858.738 kb on + strand at 3858.835 kb on - strand, within DvMF_3057 at 3858.992 kb on + strand, within DvMF_3057 at 3859.211 kb on - strand, within DvMF_3057 at 3859.289 kb on + strand, within DvMF_3057 at 3859.297 kb on - strand, within DvMF_3057 at 3859.304 kb on + strand, within DvMF_3057 at 3859.584 kb on + strand, within DvMF_3057 at 3859.599 kb on + strand, within DvMF_3057 at 3859.679 kb on + strand, within DvMF_3057 at 3859.724 kb on - strand, within DvMF_3057 at 3860.149 kb on + strand, within DvMF_3057 at 3860.263 kb on - strand at 3860.270 kb on + strand at 3860.629 kb on + strand at 3860.641 kb on + strand, within DvMF_3058 at 3861.041 kb on + strand at 3861.226 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 3,857,698 + DvMF_3056 0.40 -0.5 3,857,876 + DvMF_3056 0.57 -1.1 3,858,103 + DvMF_3056 0.79 -0.6 3,858,223 + -1.1 3,858,352 - -0.9 3,858,444 - -2.5 3,858,478 + -0.7 3,858,694 - +0.9 3,858,738 + +1.6 3,858,835 - DvMF_3057 0.13 +0.0 3,858,992 + DvMF_3057 0.22 +1.0 3,859,211 - DvMF_3057 0.34 +1.1 3,859,289 + DvMF_3057 0.39 +1.0 3,859,297 - DvMF_3057 0.39 +1.2 3,859,304 + DvMF_3057 0.40 +0.5 3,859,584 + DvMF_3057 0.56 +1.0 3,859,599 + DvMF_3057 0.57 +0.5 3,859,679 + DvMF_3057 0.61 +1.2 3,859,724 - DvMF_3057 0.64 -0.5 3,860,149 + DvMF_3057 0.88 +0.3 3,860,263 - +1.2 3,860,270 + -0.3 3,860,629 + -0.4 3,860,641 + DvMF_3058 0.10 -0.5 3,861,041 + +0.4 3,861,226 - -0.6
Or see this region's nucleotide sequence