Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2969 and DvMF_2970 overlap by 4 nucleotides DvMF_2970 and DvMF_2971 overlap by 4 nucleotides DvMF_2971 and DvMF_2972 are separated by 274 nucleotides
DvMF_2969: DvMF_2969 - ABC transporter related (RefSeq), at 3,744,570 to 3,745,826
_2969
DvMF_2970: DvMF_2970 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,745,823 to 3,746,728
_2970
DvMF_2971: DvMF_2971 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,746,725 to 3,747,585
_2971
DvMF_2972: DvMF_2972 - Glycerophosphodiester phosphodiesterase (RefSeq), at 3,747,860 to 3,748,771
_2972
Position (kb)
3746
3747
3748 Strain fitness (log2 ratio)
-2
-1
0
1 at 3745.954 kb on + strand, within DvMF_2970 at 3745.974 kb on - strand, within DvMF_2970 at 3746.035 kb on - strand, within DvMF_2970 at 3746.037 kb on + strand, within DvMF_2970 at 3746.114 kb on - strand, within DvMF_2970 at 3746.344 kb on + strand, within DvMF_2970 at 3746.360 kb on - strand, within DvMF_2970 at 3746.362 kb on + strand, within DvMF_2970 at 3746.397 kb on + strand, within DvMF_2970 at 3746.444 kb on - strand, within DvMF_2970 at 3746.644 kb on - strand at 3746.715 kb on + strand at 3747.225 kb on + strand, within DvMF_2971 at 3747.281 kb on + strand, within DvMF_2971 at 3747.281 kb on + strand, within DvMF_2971 at 3747.408 kb on + strand, within DvMF_2971 at 3747.416 kb on - strand, within DvMF_2971 at 3747.482 kb on + strand, within DvMF_2971 at 3747.642 kb on - strand at 3747.797 kb on - strand at 3747.853 kb on + strand at 3747.872 kb on + strand at 3748.166 kb on - strand, within DvMF_2972 at 3748.303 kb on - strand, within DvMF_2972 at 3748.400 kb on + strand, within DvMF_2972 at 3748.524 kb on - strand, within DvMF_2972 at 3748.536 kb on - strand, within DvMF_2972 at 3748.547 kb on + strand, within DvMF_2972
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 3,745,954 + DvMF_2970 0.14 -1.0 3,745,974 - DvMF_2970 0.17 -0.3 3,746,035 - DvMF_2970 0.23 +0.1 3,746,037 + DvMF_2970 0.24 +0.1 3,746,114 - DvMF_2970 0.32 -0.1 3,746,344 + DvMF_2970 0.58 +0.6 3,746,360 - DvMF_2970 0.59 +1.0 3,746,362 + DvMF_2970 0.59 -0.1 3,746,397 + DvMF_2970 0.63 +0.2 3,746,444 - DvMF_2970 0.69 -0.6 3,746,644 - -2.0 3,746,715 + -0.0 3,747,225 + DvMF_2971 0.58 -0.3 3,747,281 + DvMF_2971 0.65 -0.2 3,747,281 + DvMF_2971 0.65 -0.5 3,747,408 + DvMF_2971 0.79 -0.3 3,747,416 - DvMF_2971 0.80 +0.5 3,747,482 + DvMF_2971 0.88 -0.2 3,747,642 - -1.8 3,747,797 - -0.7 3,747,853 + -0.1 3,747,872 + -0.5 3,748,166 - DvMF_2972 0.34 -1.1 3,748,303 - DvMF_2972 0.49 -0.6 3,748,400 + DvMF_2972 0.59 +0.7 3,748,524 - DvMF_2972 0.73 +0.1 3,748,536 - DvMF_2972 0.74 +0.3 3,748,547 + DvMF_2972 0.75 +0.6
Or see this region's nucleotide sequence