Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2741 and DvMF_2742 overlap by 4 nucleotides DvMF_2742 and DvMF_2743 are separated by 12 nucleotides DvMF_2743 and DvMF_2744 are separated by 190 nucleotides
DvMF_2741: DvMF_2741 - type II and III secretion system protein (RefSeq), at 3,467,373 to 3,468,854
_2741
DvMF_2742: DvMF_2742 - Flp pilus assembly protein CpaB (RefSeq), at 3,468,851 to 3,469,675
_2742
DvMF_2743: DvMF_2743 - peptidase A24A prepilin type IV (RefSeq), at 3,469,688 to 3,470,278
_2743
DvMF_2744: DvMF_2744 - Flp/Fap pilin component (RefSeq), at 3,470,469 to 3,470,645
_2744
Position (kb)
3468
3469
3470 Strain fitness (log2 ratio)
-2
-1
0
1 at 3468.131 kb on + strand, within DvMF_2741 at 3468.161 kb on - strand, within DvMF_2741 at 3468.186 kb on + strand, within DvMF_2741 at 3468.246 kb on - strand, within DvMF_2741 at 3468.282 kb on - strand, within DvMF_2741 at 3468.380 kb on + strand, within DvMF_2741 at 3468.387 kb on + strand, within DvMF_2741 at 3468.450 kb on - strand, within DvMF_2741 at 3468.563 kb on - strand, within DvMF_2741 at 3468.687 kb on - strand, within DvMF_2741 at 3468.774 kb on + strand at 3468.839 kb on - strand at 3469.019 kb on - strand, within DvMF_2742 at 3469.195 kb on + strand, within DvMF_2742 at 3469.455 kb on - strand, within DvMF_2742 at 3469.677 kb on + strand at 3469.717 kb on + strand at 3469.725 kb on - strand at 3469.761 kb on + strand, within DvMF_2743 at 3469.761 kb on + strand, within DvMF_2743 at 3469.761 kb on + strand, within DvMF_2743 at 3469.786 kb on - strand, within DvMF_2743 at 3469.858 kb on - strand, within DvMF_2743 at 3469.888 kb on - strand, within DvMF_2743 at 3470.099 kb on + strand, within DvMF_2743
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 3,468,131 + DvMF_2741 0.51 -0.4 3,468,161 - DvMF_2741 0.53 -0.1 3,468,186 + DvMF_2741 0.55 -1.2 3,468,246 - DvMF_2741 0.59 -1.0 3,468,282 - DvMF_2741 0.61 -0.1 3,468,380 + DvMF_2741 0.68 +0.5 3,468,387 + DvMF_2741 0.68 -1.7 3,468,450 - DvMF_2741 0.73 -2.1 3,468,563 - DvMF_2741 0.80 +0.4 3,468,687 - DvMF_2741 0.89 -0.8 3,468,774 + -0.4 3,468,839 - -0.8 3,469,019 - DvMF_2742 0.20 +0.2 3,469,195 + DvMF_2742 0.42 -2.3 3,469,455 - DvMF_2742 0.73 +0.3 3,469,677 + -0.4 3,469,717 + -0.2 3,469,725 - -1.1 3,469,761 + DvMF_2743 0.12 -0.5 3,469,761 + DvMF_2743 0.12 +0.2 3,469,761 + DvMF_2743 0.12 -0.3 3,469,786 - DvMF_2743 0.17 -0.3 3,469,858 - DvMF_2743 0.29 -0.8 3,469,888 - DvMF_2743 0.34 +1.3 3,470,099 + DvMF_2743 0.70 -2.2
Or see this region's nucleotide sequence