Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2742

Experiment: MoYLS4 with Rifampicin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2741 and DvMF_2742 overlap by 4 nucleotidesDvMF_2742 and DvMF_2743 are separated by 12 nucleotidesDvMF_2743 and DvMF_2744 are separated by 190 nucleotides DvMF_2741: DvMF_2741 - type II and III secretion system protein (RefSeq), at 3,467,373 to 3,468,854 _2741 DvMF_2742: DvMF_2742 - Flp pilus assembly protein CpaB (RefSeq), at 3,468,851 to 3,469,675 _2742 DvMF_2743: DvMF_2743 - peptidase A24A prepilin type IV (RefSeq), at 3,469,688 to 3,470,278 _2743 DvMF_2744: DvMF_2744 - Flp/Fap pilin component (RefSeq), at 3,470,469 to 3,470,645 _2744 Position (kb) 3468 3469 3470Strain fitness (log2 ratio) -2 -1 0 1at 3468.131 kb on + strand, within DvMF_2741at 3468.161 kb on - strand, within DvMF_2741at 3468.186 kb on + strand, within DvMF_2741at 3468.246 kb on - strand, within DvMF_2741at 3468.282 kb on - strand, within DvMF_2741at 3468.380 kb on + strand, within DvMF_2741at 3468.387 kb on + strand, within DvMF_2741at 3468.450 kb on - strand, within DvMF_2741at 3468.563 kb on - strand, within DvMF_2741at 3468.687 kb on - strand, within DvMF_2741at 3468.774 kb on + strandat 3468.839 kb on - strandat 3469.019 kb on - strand, within DvMF_2742at 3469.195 kb on + strand, within DvMF_2742at 3469.455 kb on - strand, within DvMF_2742at 3469.677 kb on + strandat 3469.717 kb on + strandat 3469.725 kb on - strandat 3469.761 kb on + strand, within DvMF_2743at 3469.761 kb on + strand, within DvMF_2743at 3469.761 kb on + strand, within DvMF_2743at 3469.786 kb on - strand, within DvMF_2743at 3469.858 kb on - strand, within DvMF_2743at 3469.888 kb on - strand, within DvMF_2743at 3470.099 kb on + strand, within DvMF_2743

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml
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3,468,131 + DvMF_2741 0.51 -0.4
3,468,161 - DvMF_2741 0.53 -0.1
3,468,186 + DvMF_2741 0.55 -1.2
3,468,246 - DvMF_2741 0.59 -1.0
3,468,282 - DvMF_2741 0.61 -0.1
3,468,380 + DvMF_2741 0.68 +0.5
3,468,387 + DvMF_2741 0.68 -1.7
3,468,450 - DvMF_2741 0.73 -2.1
3,468,563 - DvMF_2741 0.80 +0.4
3,468,687 - DvMF_2741 0.89 -0.8
3,468,774 + -0.4
3,468,839 - -0.8
3,469,019 - DvMF_2742 0.20 +0.2
3,469,195 + DvMF_2742 0.42 -2.3
3,469,455 - DvMF_2742 0.73 +0.3
3,469,677 + -0.4
3,469,717 + -0.2
3,469,725 - -1.1
3,469,761 + DvMF_2743 0.12 -0.5
3,469,761 + DvMF_2743 0.12 +0.2
3,469,761 + DvMF_2743 0.12 -0.3
3,469,786 - DvMF_2743 0.17 -0.3
3,469,858 - DvMF_2743 0.29 -0.8
3,469,888 - DvMF_2743 0.34 +1.3
3,470,099 + DvMF_2743 0.70 -2.2

Or see this region's nucleotide sequence