Experiment: MoYLS4 with Rifampicin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2677 and DvMF_2678 are separated by 342 nucleotides DvMF_2678 and DvMF_2679 are separated by 294 nucleotides
DvMF_2677: DvMF_2677 - response regulator receiver sensor hybrid histidine kinase (RefSeq), at 3,380,356 to 3,382,266
_2677
DvMF_2678: DvMF_2678 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,382,609 to 3,384,705
_2678
DvMF_2679: DvMF_2679 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,385,000 to 3,386,460
_2679
Position (kb)
3382
3383
3384
3385 Strain fitness (log2 ratio)
-2
-1
0
1 at 3381.649 kb on - strand, within DvMF_2677 at 3381.664 kb on + strand, within DvMF_2677 at 3382.041 kb on + strand, within DvMF_2677 at 3382.105 kb on - strand at 3382.115 kb on - strand at 3382.159 kb on - strand at 3382.263 kb on - strand at 3382.268 kb on - strand at 3382.706 kb on + strand at 3382.782 kb on - strand at 3382.943 kb on + strand, within DvMF_2678 at 3382.943 kb on + strand, within DvMF_2678 at 3383.029 kb on + strand, within DvMF_2678 at 3383.099 kb on + strand, within DvMF_2678 at 3383.156 kb on + strand, within DvMF_2678 at 3383.266 kb on + strand, within DvMF_2678 at 3383.274 kb on - strand, within DvMF_2678 at 3383.317 kb on - strand, within DvMF_2678 at 3383.317 kb on - strand, within DvMF_2678 at 3383.432 kb on + strand, within DvMF_2678 at 3383.516 kb on - strand, within DvMF_2678 at 3383.523 kb on + strand, within DvMF_2678 at 3383.535 kb on + strand, within DvMF_2678 at 3383.552 kb on + strand, within DvMF_2678 at 3384.463 kb on + strand, within DvMF_2678 at 3384.567 kb on - strand at 3384.845 kb on + strand at 3384.876 kb on - strand at 3385.029 kb on + strand at 3385.183 kb on - strand, within DvMF_2679 at 3385.194 kb on + strand, within DvMF_2679 at 3385.396 kb on + strand, within DvMF_2679 at 3385.542 kb on + strand, within DvMF_2679 at 3385.657 kb on + strand, within DvMF_2679 at 3385.670 kb on - strand, within DvMF_2679
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Rifampicin 0.2 mg/ml remove 3,381,649 - DvMF_2677 0.68 -0.8 3,381,664 + DvMF_2677 0.68 -1.4 3,382,041 + DvMF_2677 0.88 -0.3 3,382,105 - +0.6 3,382,115 - +0.4 3,382,159 - -2.5 3,382,263 - -0.5 3,382,268 - +0.4 3,382,706 + +0.5 3,382,782 - -0.2 3,382,943 + DvMF_2678 0.16 +0.3 3,382,943 + DvMF_2678 0.16 -0.2 3,383,029 + DvMF_2678 0.20 +0.2 3,383,099 + DvMF_2678 0.23 +0.2 3,383,156 + DvMF_2678 0.26 -0.5 3,383,266 + DvMF_2678 0.31 +1.3 3,383,274 - DvMF_2678 0.32 +1.0 3,383,317 - DvMF_2678 0.34 +0.2 3,383,317 - DvMF_2678 0.34 +0.3 3,383,432 + DvMF_2678 0.39 +0.2 3,383,516 - DvMF_2678 0.43 -0.4 3,383,523 + DvMF_2678 0.44 -0.2 3,383,535 + DvMF_2678 0.44 -0.2 3,383,552 + DvMF_2678 0.45 -0.2 3,384,463 + DvMF_2678 0.88 -1.1 3,384,567 - -0.4 3,384,845 + -0.4 3,384,876 - -0.3 3,385,029 + -0.2 3,385,183 - DvMF_2679 0.13 +1.3 3,385,194 + DvMF_2679 0.13 +0.3 3,385,396 + DvMF_2679 0.27 +0.4 3,385,542 + DvMF_2679 0.37 -0.7 3,385,657 + DvMF_2679 0.45 +0.5 3,385,670 - DvMF_2679 0.46 +0.4
Or see this region's nucleotide sequence